View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17680_low_8 (Length: 295)
Name: NF17680_low_8
Description: NF17680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17680_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 8707986 - 8707706
Alignment:
| Q |
1 |
aaaaattaatcatatactcacagcagataatgatgtcacagataatcatatactctttctttaatgcaattcatgctgaaaaacactttctgacagttag |
100 |
Q |
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| T |
8707986 |
aaaaattaatcatatactcacagcagataatgatgtcacagataatcatatactctttctttaatgcaattcatgctgaaaaacactttccgacagttag |
8707887 |
T |
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| Q |
101 |
aatactttataagattccaagaatcactactctggcaccaaggaaacttcttcatctcccccttcttcaaaaccaataacactgcttctggactttttct |
200 |
Q |
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| T |
8707886 |
aatactttataagattccaagaatcactactctggcaccaaggaaacttcttcatctcccccttcttcaaaaccaataacactgcttctggactttttct |
8707787 |
T |
|
| Q |
201 |
gtgtcaagaatttcatcatgatgatgagatacactagatagaaatcacatggccttacaatgatgcaacttacaatgaaac |
281 |
Q |
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| T |
8707786 |
gtgtcaagaatttcatcatgatgatgagatacactagatagaaatcacatggccttacaatgatgcaacttacagtgaaac |
8707706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 8692786 - 8692714
Alignment:
| Q |
209 |
aatttcatcatgatgatgagatacact-agatagaaatcacatggccttacaatgatgcaacttacaatgaaa |
280 |
Q |
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| T |
8692786 |
aatttcatcatgatgatcaaatacacacagatgaaaatcacatggccttacaatgatgcaacttacaatgaaa |
8692714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8699442 - 8699402
Alignment:
| Q |
1 |
aaaaattaatcatatactcacagcagataatgatgtcacag |
41 |
Q |
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| T |
8699442 |
aaaaattaaccatgtactcacaacagataatgatgtcacag |
8699402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14383104 - 14383144
Alignment:
| Q |
1 |
aaaaattaatcatatactcacagcagataatgatgtcacag |
41 |
Q |
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||||||||| ||| |||||||| |||||||||||||||||| |
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| T |
14383104 |
aaaaattaaccatgtactcacaacagataatgatgtcacag |
14383144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 2846628 - 2846514
Alignment:
| Q |
60 |
tttaatgcaattcatgctgaaaaacactttctgacagttagaatactttataagattccaagaatcactactctggcaccaaggaaacttcttcatctcc |
159 |
Q |
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||||||||||| ||||| ||||||| ||||||| ||||| | ||||||| | |||| |||||||||||||||| |||||| || |||||||| || |
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| T |
2846628 |
tttaatgcaatccatgcagaaaaactctttctggcagttgttacactttatcaaattcaaagaatcactactctgacaccaatgacacttcttcctccta |
2846529 |
T |
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| Q |
160 |
cccttcttcaaaacc |
174 |
Q |
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| T |
2846528 |
cacttcttcaaaacc |
2846514 |
T |
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