View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_high_14 (Length: 319)
Name: NF17681_high_14
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_high_14 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 190 - 319
Target Start/End: Original strand, 35921711 - 35921840
Alignment:
| Q |
190 |
ggtagattgatgtgtatttgtgattgtaagggttgaaaagttggtctctaccacacaagagcaatctggggttactcatgcctagaggaaaaccataagt |
289 |
Q |
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| T |
35921711 |
ggtagattgatgtgtatttgtgattgtaagggttgaaaagttggcctctaccacacaagagcaatctggggttactcatgtctagaggaaaaccataagt |
35921810 |
T |
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| Q |
290 |
gaacctctggcaattgttggtgatgcccac |
319 |
Q |
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| T |
35921811 |
gaacctctggcaattgttggtgatgcccac |
35921840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 35921547 - 35921649
Alignment:
| Q |
9 |
atgaaaatgaagaaattgac----atggacatagtttttcttcgtctgttttttgggtcattgaagacgtgttcaccaaactttaccttcataactgatt |
104 |
Q |
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| T |
35921547 |
atgaaaatgaagaaattgactgacatggacatggtttttcttcgtctgttttttgggtcattgaagacgtgttcaccaaactttaccttcataactgatt |
35921646 |
T |
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| Q |
105 |
ctt |
107 |
Q |
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| T |
35921647 |
ctt |
35921649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 35921662 - 35921692
Alignment:
| Q |
122 |
ttagtgtttttgtacataaatacgtactcgg |
152 |
Q |
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| T |
35921662 |
ttagtgtttttgtacataaatacgtactcgg |
35921692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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