View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17681_high_25 (Length: 248)

Name: NF17681_high_25
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17681_high_25
NF17681_high_25
[»] chr6 (6 HSPs)
chr6 (54-207)||(6922817-6922970)
chr6 (149-238)||(6922956-6923045)
chr6 (54-136)||(6949288-6949370)
chr6 (1-34)||(6922764-6922797)
chr6 (149-185)||(6923069-6923105)
chr6 (70-139)||(6943649-6943718)
[»] chr4 (1 HSPs)
chr4 (54-136)||(1792070-1792152)
[»] scaffold0067 (1 HSPs)
scaffold0067 (54-139)||(41470-41555)
[»] chr8 (1 HSPs)
chr8 (66-115)||(42437945-42437994)
[»] chr1 (1 HSPs)
chr1 (74-110)||(32989996-32990032)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 54 - 207
Target Start/End: Original strand, 6922817 - 6922970
Alignment:
Q  54 gaagaaaacaaaaatatttcctataatttaaaattataataactaaatatcatttactaaaagtggcagtgaaataaaatttatttgttccgaaaacata 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  6922817 gaagaaaacaaaaatatttcctataatttaaaattataataactaaatatcatttactaaaagtggcagtgaaataaaatttatttgttctggaaacata 6922916  T
Q  154 atttgaaaaaatctatattccacgtatgtagtcaaggacacataatttgaaaaa 207  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6922917 atttgaaaaaatctatattccacgtatgtagtcaaggagacataatttgaaaaa 6922970  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 6922956 - 6923045
Alignment:
Q  149 acataatttgaaaaaatctatattccacgtatgtagtcaaggacacataatttgaaaaaatctctatccaatgtaatatcatcaattcat 238  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6922956 acataatttgaaaaattctatattccacgtatgtagtcaaggagacataatttgaaaaaatctctatccaatgtaatatcatcaattcat 6923045  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 6949288 - 6949370
Alignment:
Q  54 gaagaaaacaaaaatatttcctataatttaaaattataataactaaatatcatttactaaaagtggcagtgaaataaaattta 136  Q
    ||||||||||||||| |||||||| |||| |||||||||| | |||||||||||||||||||||| | |||||||||||||||    
T  6949288 gaagaaaacaaaaatgtttcctatcattttaaattataatgattaaatatcatttactaaaagtgacggtgaaataaaattta 6949370  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6922764 - 6922797
Alignment:
Q  1 ctatccaatccatctttaaattagtagttaaatg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6922764 ctatccaatccatctttaaattagtagttaaatg 6922797  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 6923069 - 6923105
Alignment:
Q  149 acataatttgaaaaaatctatattccacgtatgtagt 185  Q
    ||||||||||||||||||||||||||||| |||||||    
T  6923069 acataatttgaaaaaatctatattccacgcatgtagt 6923105  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 6943649 - 6943718
Alignment:
Q  70 tttcctataatttaaaattataataactaaatatcatttactaaaagtggcagtgaaataaaatttattt 139  Q
    |||||||| | |||||||||||||||||| |||| |||||| ||||||   | ||||||| |||||||||    
T  6943649 tttcctatcaattaaaattataataactagatattatttaccaaaagtttaaatgaaatacaatttattt 6943718  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 1792152 - 1792070
Alignment:
Q  54 gaagaaaacaaaaatatttcctataatttaaaattataataactaaatatcatttactaaaagtggcagtgaaataaaattta 136  Q
    |||||||| | || ||||| |||| ||| | ||||||||||| ||||| | |||||||||||||| |  ||||||||||||||    
T  1792152 gaagaaaaaataattattttctatcattgacaattataataattaaatcttatttactaaaagtgtcgatgaaataaaattta 1792070  T

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Target: scaffold0067 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 41470 - 41555
Alignment:
Q  54 gaagaaaacaaaaatatttcctataatttaaaattataataactaaatatcatttactaaaagtggcagtgaaataaaatttattt 139  Q
    |||||||| | || ||||| |||| ||| | ||||||||||| ||||| | |||||| ||||| | || |||||||||||||||||    
T  41470 gaagaaaaaataattattttctatcattgataattataataattaaatcttatttaccaaaagcgtcaatgaaataaaatttattt 41555  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 42437994 - 42437945
Alignment:
Q  66 aatatttcctataatttaaaattataataactaaatatcatttactaaaa 115  Q
    ||||||| |||| ||||||||||||||||| | ||||| |||||||||||    
T  42437994 aatattttctatcatttaaaattataataatttaatattatttactaaaa 42437945  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 32989996 - 32990032
Alignment:
Q  74 ctataatttaaaattataataactaaatatcatttac 110  Q
    |||||||||||||||||||||||||||| | ||||||    
T  32989996 ctataatttaaaattataataactaaatcttatttac 32990032  T

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