View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_high_28 (Length: 242)
Name: NF17681_high_28
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_high_28 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 6922395 - 6922297
Alignment:
| Q |
126 |
cagccgcatcgttctccacaacttctagggtttcttccacaaaaagttcgaagggttttcacgtacaacttcaacaacctactgttctcatgaatatcc |
224 |
Q |
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| T |
6922395 |
cagccgcatcgttctccacaacttctagggtttcttccacaaaaagttcgaagggttttcacgtacaacttcaacaacctactgttctcatgaatatcc |
6922297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 6948869 - 6948826
Alignment:
| Q |
182 |
tttcacgtacaacttcaacaacc-tactgttctcatgaatatcc |
224 |
Q |
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| T |
6948869 |
tttcacgtacaacttcaataaccgtactgttctcatgaatatcc |
6948826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 6936228 - 6936151
Alignment:
| Q |
147 |
cttctagggtttcttccacaaaaagtt-cgaagggttttcacgtacaacttcaacaac-ctactgttctcatgaatatc |
223 |
Q |
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| T |
6936228 |
cttctagggtttcttccacaaaaaattccaaagggttttcacttccaac-tcaacaacaggactgttctcatgaatatc |
6936151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 6922436 - 6922407
Alignment:
| Q |
80 |
cactttcaacagccgcatcgttcttctttc |
109 |
Q |
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| T |
6922436 |
cactttcaacagccgcatcgttcttctttc |
6922407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 1998921 - 1998865
Alignment:
| Q |
148 |
ttctagggtttcttccacaaaaagttcgaagggttttcacgtacaacttcaacaacc |
204 |
Q |
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| T |
1998921 |
ttctagggtttcttccacgaaaagttcgaagggttttcacgtacaacttcaacaacc |
1998865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 160984 - 161038
Alignment:
| Q |
147 |
cttctagggtttcttccacaaaaagttcgaagggttttcacgtacaacttcaaca |
201 |
Q |
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| T |
160984 |
cttctagggtttcttccacaaaagattcgaagggttttcactttcaacctcaaca |
161038 |
T |
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