View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_high_31 (Length: 237)
Name: NF17681_high_31
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 3701020 - 3700851
Alignment:
| Q |
16 |
aatatacggaacacccatacaaccctcaaaccaaaattgaggccgacatatacttgcgaaaaacaccgcacgcatacccctgcctcaccaccagaagaca |
115 |
Q |
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| T |
3701020 |
aatatacggaacacccatacaaccctcaaaccagaattgaggccgacatatacgtgcgaaaaacaccgcacgcatacccctacctcaccaccagaagaca |
3700921 |
T |
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| Q |
116 |
gagaagcaccaaaaagcccgaaactgcccagccaccaatcaaaacaggaacactccaacatatggaagca |
185 |
Q |
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| T |
3700920 |
gagaagcaccaaaaagcccgaaactgcccagccaccaatcaaaacagaaacactccaacatatggaagca |
3700851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 87550 - 87503
Alignment:
| Q |
52 |
ttgaggccgacatatacttgcgaaaaacaccgcacgcatacccctgcct |
100 |
Q |
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| T |
87550 |
ttgaggccgacatatacatgc-aaaaataccgcacgcatacccctgcct |
87503 |
T |
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