View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17681_low_10 (Length: 365)

Name: NF17681_low_10
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17681_low_10
NF17681_low_10
[»] chr2 (4 HSPs)
chr2 (6-342)||(42633118-42633454)
chr2 (1-101)||(8986760-8986861)
chr2 (1-142)||(38583667-38583809)
chr2 (1-143)||(32290946-32291088)
[»] chr1 (5 HSPs)
chr1 (1-142)||(11993422-11993562)
chr1 (1-140)||(2075237-2075378)
chr1 (1-140)||(2071707-2071848)
chr1 (1-92)||(10354203-10354294)
chr1 (1-139)||(3774493-3774632)
[»] chr5 (2 HSPs)
chr5 (1-171)||(24137360-24137531)
chr5 (7-55)||(27315132-27315180)
[»] chr6 (5 HSPs)
chr6 (1-140)||(28063176-28063316)
chr6 (1-121)||(33424157-33424277)
chr6 (1-142)||(13098035-13098176)
chr6 (28-91)||(9365292-9365355)
chr6 (1-116)||(21862383-21862499)
[»] chr7 (8 HSPs)
chr7 (1-139)||(24486653-24486790)
chr7 (1-142)||(17921376-17921517)
chr7 (3-142)||(44338842-44338982)
chr7 (1-142)||(15614427-15614569)
chr7 (1-59)||(26403378-26403436)
chr7 (1-59)||(46963241-46963299)
chr7 (2-142)||(3889543-3889683)
chr7 (2-142)||(3902035-3902175)
[»] scaffold0499 (1 HSPs)
scaffold0499 (1-142)||(7032-7173)
[»] chr4 (3 HSPs)
chr4 (1-101)||(54148109-54148209)
chr4 (3-121)||(24225866-24225984)
chr4 (1-59)||(16871527-16871585)
[»] scaffold0025 (1 HSPs)
scaffold0025 (42-142)||(154707-154806)
[»] chr8 (3 HSPs)
chr8 (3-142)||(20242519-20242659)
chr8 (3-142)||(20250501-20250641)
chr8 (7-101)||(5616763-5616857)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-138)||(14430-14568)
[»] chr3 (3 HSPs)
chr3 (7-101)||(22821042-22821136)
chr3 (1-59)||(42531166-42531224)
chr3 (11-59)||(34338101-34338149)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 42633118 - 42633454
Alignment:
Q  6 ctaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagctaata 105  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42633118 ctaaataatataaacttttaacactacacctcaagttaaagcttactaaacttttagtttattataaattaaccctgaaaataaactaaatcagctaata 42633217  T
Q  106 gcataaccaataaagaacaacaaccaaagtgagttattaacatagagggagtagcaaggaccatcaaccactcaaatagagaactaaagacgcatacaaa 205  Q
    |||| || ||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||    
T  42633218 gcatgactaatgaagaacaacaaccaaagtgagttattaagatagaggaagcagcaaggaccatcaaccagtcaaatagagaactaaagacgcatacaaa 42633317  T
Q  206 caaactgggagagtgttcccaaacacccgttgaaaccgaagttggatttttattttaccaatcaatagcaacaagaatcaagcaaagaaatccacgtagg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42633318 caaactgggagagtgttcccaaacacccgttgaaaccgaagttggatttttattttaccaatcaatagcaacaagaatcaagcaaagaaatccacgtagg 42633417  T
Q  306 acaaaatcatttcaaccgaaatcaatgctaaatgata 342  Q
    ||||||||||||||||| |||||||||||||||||||    
T  42633418 acaaaatcatttcaaccaaaatcaatgctaaatgata 42633454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8986861 - 8986760
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctg-aaaataaactaaatcag 99  Q
    ||||||||||||||||||| || ||||||||| ||||||  | |||||||||||||||| || || ||| |||||| ||  | ||||||||| |||||||    
T  8986861 acatactaaataatataaagttctaacactacccctcaagctgaagcttactaagctttaagcttgttacaaattaaccaagaaaaataaaccaaatcag 8986762  T
Q  100 ct 101  Q
    ||    
T  8986761 ct 8986760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 38583667 - 38583809
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaatta--cccctgaaaataaactaaatca 98  Q
    ||||||||| ||||||||| || ||||||||| ||||||  | ||||||||||||| ||||  || ||| ||||||  ||    ||||||||| ||||||    
T  38583667 acatactaagtaatataaagttctaacactacccctcaagctgaagcttactaagc-tttaacttgttacaaattaatccaaaaaaaataaaccaaatca 38583765  T
Q  99 gctaatagcataaccaataaagaacaacaaccaaagtgagttat 142  Q
    |||  ||| | ||||||| |||| || |||||||||||||||||    
T  38583766 gctggtagaagaaccaattaagagcagcaaccaaagtgagttat 38583809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 32291088 - 32290946
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctg-aaaataaactaaatcag 99  Q
    |||||||||||||||||||  | ||||||||| ||||||  | |||||||||||||||| || || |||  ||||| ||  | |||||||||| ||||||    
T  32291088 acatactaaataatataaagatctaacactacccctcaagctgaagcttactaagctttaagcttgttaccaattaacctagaaaaataaactgaatcag 32290989  T
Q  100 ctaatagcataaccaataaagaacaacaaccaaagtgagttatt 143  Q
    ||  ||||| ||||| |  ||| || |||| |||||||||||||    
T  32290988 ctgttagca-aaccattggagagcagcaactaaagtgagttatt 32290946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 11993562 - 11993422
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagc 100  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||||| |||| ||| || || ||| |||||| |   |||||||||| ||||||||    
T  11993562 acatactaaataatataaacttctaacactacccctcaagttaaagcttattaagatttaagcttgtta-aaattaacaaagaaaataaaccaaatcagc 11993464  T
Q  101 taatagcataaccaataaagaacaacaaccaaagtgagttat 142  Q
    | |||||||||||||| |||| || |||||||||||||||||    
T  11993463 tgatagcataaccaatgaagagcatcaaccaaagtgagttat 11993422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 2075237 - 2075378
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagc-ttttagtttattataaatt-acccctgaaaataaactaaatca 98  Q
    |||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||| ||| || || ||| ||||| | || | ||||||||||||||||    
T  2075237 acatactaaataatataaacttgtaacactacccctcaagctaaagcttactaagcgtttaagcttgttacaaattaaaccataaaaataaactaaatca 2075336  T
Q  99 gctaatagcataaccaataaagaacaacaaccaaagtgagtt 140  Q
    | | |||||||||| |||| ||| ||||||||||||||||||    
T  2075337 gttgatagcataacaaatagagagcaacaaccaaagtgagtt 2075378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 2071707 - 2071848
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagc-ttttagtttattataaatt-acccctgaaaataaactaaatca 98  Q
    |||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||| ||| || || ||| ||||| | || | ||||||||||||||||    
T  2071707 acatactaaataatataaacttgtaacactacccctcaagctaaagcttactaagcgtttaagcttgttacaaattaaaccataaaaataaactaaatca 2071806  T
Q  99 gctaatagcataaccaataaagaacaacaaccaaagtgagtt 140  Q
    | | |||||||||| |||  ||| ||||||||||||||||||    
T  2071807 gttgatagcataacaaatggagagcaacaaccaaagtgagtt 2071848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 10354294 - 10354203
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaact 92  Q
    ||||||||||||||||||| || ||||||||| | ||||  |||||||||||||||||| ||||| ||| |||||| |||  ||||||||||    
T  10354294 acatactaaataatataaagttctaacactactcttcaagctaaagcttactaagctttaagtttgttagaaattaacccaaaaaataaact 10354203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 3774493 - 3774632
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctg-aaaataaactaaatcag 99  Q
    ||||| |||| ||||||||||| ||||| ||| |||||| |||||||||||||||||||  | || ||| |||||| ||| | ||||||||| | ||||     
T  3774493 acatattaaaaaatataaacttctaacattacccctcaagttaaagcttactaagctttatgcttgttacaaattaacccagaaaaataaaccatatcaa 3774592  T
Q  100 ctaatagcataaccaataaagaacaacaaccaaagtgagt 139  Q
    || |||||| ||| | |  ||| |||||||||||||||||    
T  3774593 ctgatagcagaactagtggagatcaacaaccaaagtgagt 3774632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 24137531 - 24137360
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctg-aaaataaactaaatcag 99  Q
    ||||||||||||||||||| || ||||||||| ||||||  |||||||||||||||||| || || ||| |||||| ||| | ||||||||| |||||||    
T  24137531 acatactaaataatataaagttctaacactacccctcaagctaaagcttactaagctttaagcttgttacaaattaacccagaaaaataaaccaaatcag 24137432  T
Q  100 ctaatagcataaccaataaagaacaacaaccaaagtgagttattaacatagagggagtagcaaggaccatca 171  Q
    ||  ||||| ||||||| |||| || |||||||| ||||||||   ||||||| ||| |||||| |||||||    
T  24137431 ctgctagcagaaccaatgaagagcagcaaccaaaatgagttatcttcatagagagagcagcaagaaccatca 24137360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 27315180 - 27315132
Alignment:
Q  7 taaataatataaacttttaacactacacctcaaattaaagcttactaag 55  Q
    |||||||||| || |||||||||||| ||||||  ||||||||||||||    
T  27315180 taaataatatgaagttttaacactacccctcaaggtaaagcttactaag 27315132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 28063176 - 28063316
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaa-taaactaaatcag 99  Q
    ||||||||||||||||||| || ||||||| | ||||||  | ||| |||||||||||| || || ||| |||||| ||| ||||| ||||| |||||||    
T  28063176 acatactaaataatataaagttctaacacttcccctcaagatgaagtttactaagctttaagcttgttacaaattaacccagaaaaataaaccaaatcag 28063275  T
Q  100 ctaatagcataaccaataaagaacaacaaccaaagtgagtt 140  Q
    || ||||||||||||||| ||| || |||||||||||||||    
T  28063276 ctgatagcataaccaatagagagcagcaaccaaagtgagtt 28063316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 33424157 - 33424277
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagc 100  Q
    ||||||||||||||||||| || ||||||||| |||||| || |||||||||||||||| ||||| ||| ||||||  || |||||||||| |||| |||    
T  33424157 acatactaaataatataaagttctaacactacccctcaagttgaagcttactaagctttaagtttgttacaaattaatccagaaaataaaccaaattagc 33424256  T
Q  101 taatagcataaccaataaaga 121  Q
    |  ||||| ||||||| ||||    
T  33424257 tcgtagcacaaccaatgaaga 33424277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 13098176 - 13098035
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagc 100  Q
    ||||||||||   ||||||||| ||||||||| ||| ||  ||| |||||||||| ||| || |  ||| |||||| |||||||||||||| ||||||||    
T  13098176 acatactaaaatgtataaacttctaacactaccccttaagctaaggcttactaaggtttaagctcgttacaaattaaccctgaaaataaaccaaatcagc 13098077  T
Q  101 taatagcataaccaataaagaacaacaaccaaagtgagttat 142  Q
    | || |||||| |||| |||| ||||| ||||||||||||||    
T  13098076 tcatggcataatcaatgaagagcaacacccaaagtgagttat 13098035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 9365292 - 9365355
Alignment:
Q  28 actacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaac 91  Q
    ||||| |||||| |||||||||||||| |||| |  |||||| |||||| ||||||||||||||    
T  9365292 actacccctcaagttaaagcttactaaactttaaacttattacaaattaaccctgaaaataaac 9365355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21862499 - 21862383
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaa-ataaactaaatcag 99  Q
    ||||||||||||||||||| || ||||||| | ||||||  | |||| |||||| |||| || || ||| |||||| ||  |||| |||||| |||||||    
T  21862499 acatactaaataatataaagttctaacacttcccctcaagctgaagcatactaaactttaagcttgttacaaattaacctagaaatataaaccaaatcag 21862400  T
Q  100 ctaatagcataaccaat 116  Q
    ||  ||||| |||||||    
T  21862399 ctgttagcaaaaccaat 21862383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 24486653 - 24486790
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagc 100  Q
    |||||||||||||||||||||| ||||||||| | | || ||||||||||||||||||| ||||| ||| ||||||| ||  ||||||||| |||| |      
T  24486653 acatactaaataatataaacttctaacactacccttgaagttaaagcttactaagctttaagtttgttacaaattactcc-aaaaataaaccaaatgaag 24486751  T
Q  101 taatagcataaccaataaagaacaacaaccaaagtgagt 139  Q
    | |||||||||||||| || | || |||||| |||||||    
T  24486752 ttatagcataaccaatgaatagcagcaaccagagtgagt 24486790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 17921376 - 17921517
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagc 100  Q
    |||||||||||||| |||| ||| |||| ||| ||||||  |||||||||||||||||| || || ||| |||||| ||| |||||||||  |||| |||    
T  17921376 acatactaaataatttaaaatttgaacagtacccctcaagctaaagcttactaagctttaagcttgttacaaattaacccagaaaataaaacaaattagc 17921475  T
Q  101 taatagcataaccaataaagaacaacaaccaaagtgagttat 142  Q
    | ||| || |||||| | ||| || ||||| |||||||||||    
T  17921476 tgataacagaaccaacagagagcagcaaccgaagtgagttat 17921517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 44338982 - 44338842
Alignment:
Q  3 atactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctg-aaaataaactaaatcagct 101  Q
    ||||||| ||||||||| ||  ||||| || |||||| || | |||||||||||||| ||  ||||| ||||||  |  | ||||||||| |||||||||    
T  44338982 atactaagtaatataaagttcaaacaccacccctcaagttgaggcttactaagctttaagcctattacaaattaatctagaaaaataaaccaaatcagct 44338883  T
Q  102 aatagcataaccaataaagaacaacaaccaaagtgagttat 142  Q
      ||||| ||||||| |||| || |||||||||||||||||    
T  44338882 gttagcagaaccaatgaagagcagcaaccaaagtgagttat 44338842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 15614427 - 15614569
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctg-aaaataaactaaatcag 99  Q
    ||||||||||||||||||| || | ||||||| |||| |  | |||||||||||| ||| || || ||| |||||| ||| | ||||||||| ||||| |    
T  15614427 acatactaaataatataaagttcttacactacccctcgagctgaagcttactaagttttaagcttgttaaaaattaacccagaaaaataaaccaaatctg 15614526  T
Q  100 ctaatagcataaccaataaagaacaacaaccaaagtgagttat 142  Q
     |  ||||| |||||||  ||| || |||||||||||||||||    
T  15614527 ttgttagcaaaaccaatggagagcatcaaccaaagtgagttat 15614569  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 26403436 - 26403378
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttt 59  Q
    ||||||||||||||||||| || ||||||||| ||||||  ||||| ||||||||||||    
T  26403436 acatactaaataatataaagttctaacactacccctcaagctaaagtttactaagcttt 26403378  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46963241 - 46963299
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttt 59  Q
    ||||||||||||||||||| || ||||||||| ||||||  | ||||||||||||||||    
T  46963241 acatactaaataatataaagttctaacactacccctcaagctgaagcttactaagcttt 46963299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 3889683 - 3889543
Alignment:
Q  2 catactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagct 101  Q
    |||| ||||||||||||| || ||||||| | | | ||  ||||| || ||||||||| |  |||||| |||||| |||  ||||||||| |||||| |     
T  3889683 catattaaataatataaagttctaacacttccctttaagctaaagtttgctaagctttaaacttattacaaattaacccaaaaaataaaccaaatcaacc 3889584  T
Q  102 aatagcataaccaataaagaacaacaaccaaagtgagttat 142  Q
     ||| || ||||||| |||| || |||||||||||| ||||    
T  3889583 gatatcaaaaccaatgaagagcagcaaccaaagtgaattat 3889543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 3902175 - 3902035
Alignment:
Q  2 catactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagct 101  Q
    |||| ||||||||||||| || ||||||| | | | ||  |||||||| ||||||||| |  || ||| |||||| ||   ||||||||| | |||||||    
T  3902175 catattaaataatataaagttctaacacttccctttaagctaaagcttgctaagctttaaacttgttacaaattaaccgaaaaaataaaccagatcagct 3902076  T
Q  102 aatagcataaccaataaagaacaacaaccaaagtgagttat 142  Q
     ||| || ||||||| |||| || |||||||||||| ||||    
T  3902075 gatatcaaaaccaatgaagagcagcaaccaaagtgaattat 3902035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 7032 - 7173
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagc 100  Q
    |||||||||| | ||||||||| ||||||||| ||| ||  |||||||||||||| ||| || |  ||| |||||| || ||||||||||| ||||||||    
T  7032 acatactaaaaagtataaacttctaacactaccccttaagctaaagcttactaaggtttaagctcgttacaaattaaccttgaaaataaaccaaatcagc 7131  T
Q  101 taatagcataaccaataaagaacaacaaccaaagtgagttat 142  Q
    | || |||||| ||||  ||| ||||| ||||||||||||||    
T  7132 tcatggcataatcaatggagagcaacacccaaagtgagttat 7173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 54148209 - 54148109
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagc 100  Q
    ||||| |||||||||||||||||||||||||| ||||||  | |||||||||||||||| || || ||| |||||| |||  ||||||||| |||| |||    
T  54148209 acatagtaaataatataaacttttaacactacccctcaagctgaagcttactaagctttaagcttgttacaaattaaccccaaaaataaaccaaattagc 54148110  T
Q  101 t 101  Q
    |    
T  54148109 t 54148109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 24225984 - 24225866
Alignment:
Q  3 atactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagcta 102  Q
    ||||||||||||||||||||  |||||||| ||| || ||||||||||||||| ||  || | |||| |||||| ||  |||||||||| |||||||||     
T  24225984 atactaaataatataaacttcgaacactacccctgaagttaaagcttactaagtttgaagctcattacaaattaacctcgaaaataaaccaaatcagctg 24225885  T
Q  103 atagcataaccaataaaga 121  Q
    ||| ||||| |||| ||||    
T  24225884 ataacataatcaatgaaga 24225866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16871585 - 16871527
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttt 59  Q
    ||||||||||||||||||| || ||||||||| ||||||  | ||||||||||||||||    
T  16871585 acatactaaataatataaagttctaacactacccctcaagctgaagcttactaagcttt 16871527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 154707 - 154806
Alignment:
Q  42 taaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagctaatagcataaccaataaagaacaacaaccaaagtgagtta 141  Q
    ||||| |||||||| ||| ||||| ||| |||||| |||| ||||||||| |||| |||| || |||||| ||||| ||||||||| |||||||||||||    
T  154707 taaagattactaagttttaagtttgttacaaattaaccctaaaaataaaccaaattagctcat-gcataatcaatagagaacaacacccaaagtgagtta 154805  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 20242659 - 20242519
Alignment:
Q  3 atactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctg-aaaataaactaaatcagct 101  Q
    ||||||| ||||||||| ||  ||||| || |||||| || | |||||||||||||| ||  ||||| ||||||  |  | ||||||||| |||||||||    
T  20242659 atactaagtaatataaagttcaaacaccacccctcaagttgaggcttactaagctttaagcctattacaaattaatctagaaaaataaaccaaatcagct 20242560  T
Q  102 aatagcataaccaataaagaacaacaaccaaagtgagttat 142  Q
      ||||| ||||||| |||| || |||||||||||||||||    
T  20242559 gttagcagaaccaatgaagagcagcaaccaaagtgagttat 20242519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 20250501 - 20250641
Alignment:
Q  3 atactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctg-aaaataaactaaatcagct 101  Q
    ||||||| ||||||||| ||  ||||| || |||||| || | |||||||||||||| ||  ||||| ||||||  |  | ||||||||| |||||||||    
T  20250501 atactaagtaatataaagttcaaacaccacccctcaagttgaggcttactaagctttaagcctattacaaattaatctagaaaaataaaccaaatcagct 20250600  T
Q  102 aatagcataaccaataaagaacaacaaccaaagtgagttat 142  Q
      ||||| ||||||| |||| || |||||||||||||||||    
T  20250601 gttagcagaaccaatgaagagcagcaaccaaagtgagttat 20250641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 5616857 - 5616763
Alignment:
Q  7 taaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagct 101  Q
    ||||||||||||| || ||||||||| ||| ||  |||||| ||||||||||| |  || ||| |||||| |||  ||||||||| |||||||||    
T  5616857 taaataatataaagttctaacactacccctaaagctaaagcctactaagctttaaacttgttacaaattaacccaaaaaataaaccaaatcagct 5616763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 14430 - 14568
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaatt-acccctgaaaataaactaaatcag 99  Q
    ||||||||| ||||||||| || |||||| ||  |||||  | |||||||||||||||| || || ||| ||||| |||   |||||||||  |||||||    
T  14430 acatactaattaatataaaattctaacaccacctctcaagctgaagcttactaagctttaagcttgttacaaattgaccgaggaaaataaatcaaatcag 14529  T
Q  100 ctaatagcataaccaataaagaacaacaaccaaagtgag 138  Q
    ||  ||  | |||||||||||| || |||||||||||||    
T  14530 ctgttaaaagaaccaataaagagcagcaaccaaagtgag 14568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 22821042 - 22821136
Alignment:
Q  7 taaataatataaacttttaacactacacctcaaattaaagcttactaagcttttagtttattataaattacccctgaaaataaactaaatcagct 101  Q
    ||||||||||||| || ||||||||| ||| ||  |||||| ||||||||||| |  || ||| |||||| |||  ||||||||| |||||||||    
T  22821042 taaataatataaagttctaacactacccctaaagctaaagcctactaagctttaaacttgttacaaattaacccaaaaaataaaccaaatcagct 22821136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42531224 - 42531166
Alignment:
Q  1 acatactaaataatataaacttttaacactacacctcaaattaaagcttactaagcttt 59  Q
    |||||||||||| |||||| || ||||||||  ||||||| | ||||||||||||||||    
T  42531224 acatactaaatagtataaagttctaacactaaccctcaaactgaagcttactaagcttt 42531166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 34338149 - 34338101
Alignment:
Q  11 taatataaacttttaacactacacctcaaattaaagcttactaagcttt 59  Q
    ||||||||||||||||  |||| ||||||  ||||||||||||||||||    
T  34338149 taatataaacttttaaagctacccctcaagctaaagcttactaagcttt 34338101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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