View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17681_low_12 (Length: 324)

Name: NF17681_low_12
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17681_low_12
NF17681_low_12
[»] chr8 (2 HSPs)
chr8 (70-314)||(14150042-14150290)
chr8 (21-65)||(21145699-21145743)
[»] chr6 (2 HSPs)
chr6 (21-70)||(10219532-10219581)
chr6 (29-66)||(516062-516099)
[»] chr1 (4 HSPs)
chr1 (10-66)||(34177536-34177592)
chr1 (29-66)||(31134794-31134831)
chr1 (1-63)||(35684931-35684993)
chr1 (29-66)||(32669784-32669821)
[»] chr7 (4 HSPs)
chr7 (21-66)||(21401750-21401795)
chr7 (1-66)||(38838688-38838753)
chr7 (1-66)||(8062912-8062977)
chr7 (21-65)||(30839963-30840007)
[»] chr4 (5 HSPs)
chr4 (1-66)||(12034381-12034446)
chr4 (1-65)||(51151062-51151127)
chr4 (1-65)||(29223115-29223179)
chr4 (1-66)||(11298455-11298518)
chr4 (1-66)||(17381283-17381348)
[»] chr5 (4 HSPs)
chr5 (30-66)||(2707820-2707856)
chr5 (1-65)||(6217685-6217749)
chr5 (29-69)||(16127046-16127086)
chr5 (1-65)||(29686426-29686490)
[»] chr3 (2 HSPs)
chr3 (21-69)||(23567361-23567409)
chr3 (1-66)||(46848412-46848477)
[»] chr2 (1 HSPs)
chr2 (1-64)||(43503044-43503107)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-46)||(14759-14804)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 70 - 314
Target Start/End: Complemental strand, 14150290 - 14150042
Alignment:
Q  70 tactatagaatttcttatgacattatgatgtatatatgcattagt----atttatgtataatacctcttcaagattcttgccagaaatctctttatagtg 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  14150290 tactatagaatttcttatgacattatgatgtatatatgcattagtgtttatttatttataatacctcttcaagattcttcccagaaatctctttatagtg 14150191  T
Q  166 cttgtaaactgcttgaagatgtagcttgcttcttgttgccaatatccttattacttcatcatcctcaacaattggcttcttttgagcattcttaatggca 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14150190 cttgtaaactgcttgaagatgtagcttgcttcttgttgccaatatccttattacttcatcatcctcaacaattggcttgttttgagcattcttaatggca 14150091  T
Q  266 ttggaaagggttttggcctctgattttgcagtgtcatctttaacctttg 314  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  14150090 ttggaaagtgttttagcctctgattttgcagtgtcatctttaacctttg 14150042  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 21145699 - 21145743
Alignment:
Q  21 tattgtagctactcgttacacgttcagggaccaaaatgactatta 65  Q
    |||||| |||||||||||||| |||||| ||||||||||||||||    
T  21145699 tattgtggctactcgttacacattcaggaaccaaaatgactatta 21145743  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 10219581 - 10219532
Alignment:
Q  21 tattgtagctactcgttacacgttcagggaccaaaatgactattactcct 70  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  10219581 tattgtggctactcgttacacattcagggaccaaaatgactattactcct 10219532  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 516062 - 516099
Alignment:
Q  29 ctactcgttacacgttcagggaccaaaatgactattac 66  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  516062 ctactcgttacacattcagggaccaaaatgactattac 516099  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 34177536 - 34177592
Alignment:
Q  10 cattgaagaattattgtagctactcgttacacgttcagggaccaaaatgactattac 66  Q
    |||||||| | |||||||||||||| |||||| ||||||||||||||||||||||||    
T  34177536 cattgaaggactattgtagctactcattacacattcagggaccaaaatgactattac 34177592  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 31134794 - 31134831
Alignment:
Q  29 ctactcgttacacgttcagggaccaaaatgactattac 66  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  31134794 ctactcgttacacattcagggaccaaaatgactattac 31134831  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35684931 - 35684993
Alignment:
Q  1 attttaatacattgaagaattattgtagctactcgttacacgttcagggaccaaaatgactat 63  Q
    ||||| ||||||||||| | ||||||| |||||| || ||| ||||||||||||| |||||||    
T  35684931 attttgatacattgaaggactattgtaactactcattgcacattcagggaccaaagtgactat 35684993  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 32669821 - 32669784
Alignment:
Q  29 ctactcgttacacgttcagggaccaaaatgactattac 66  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  32669821 ctactcgttacacattcatggaccaaaatgactattac 32669784  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 21401795 - 21401750
Alignment:
Q  21 tattgtagctactcgttacacgttcagggaccaaaatgactattac 66  Q
    ||||||||||||||||||||| || || ||||||||||||||||||    
T  21401795 tattgtagctactcgttacacatttagagaccaaaatgactattac 21401750  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 38838688 - 38838753
Alignment:
Q  1 attttaatacattga-agaattattgtagctactcgttacacgttcagggaccaaaatgactattac 66  Q
    ||||||||||||||| |||| ||||||  ||||||||||||| ||||||||||||||| | ||||||    
T  38838688 attttaatacattgatagaa-tattgtgactactcgttacacattcagggaccaaaataattattac 38838753  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8062912 - 8062977
Alignment:
Q  1 attttaatacattgaagaattattgtagctactcgttacacgttcagggaccaaaatgactattac 66  Q
    |||||||||||||||   | ||||||  ||||||||||||| |||| |||||||||| ||||||||    
T  8062912 attttaatacattgacagactattgtgactactcgttacacattcaaggaccaaaataactattac 8062977  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 30839963 - 30840007
Alignment:
Q  21 tattgtagctactcgttacacgttcagggaccaaaatgactatta 65  Q
    ||||||| ||| |||||| || |||||||||||||||||||||||    
T  30839963 tattgtaactattcgttatacattcagggaccaaaatgactatta 30840007  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12034446 - 12034381
Alignment:
Q  1 attttaatacattgaagaattattgtagctactcgttacacgttcagggaccaaaatgactattac 66  Q
    ||||| ||||||||| | | ||||||  |||||||||| || ||||||||||||||||||||||||    
T  12034446 attttgatacattgagggactattgtgactactcgttatacattcagggaccaaaatgactattac 12034381  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 51151062 - 51151127
Alignment:
Q  1 attttaatacattga-agaattattgtagctactcgttacacgttcagggaccaaaatgactatta 65  Q
    ||||||||||||||| ||| |||||||  ||||||||||||| |||| |||||||||| |||||||    
T  51151062 attttaatacattgagagatttattgtgactactcgttacacattcaaggaccaaaataactatta 51151127  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29223179 - 29223115
Alignment:
Q  1 attttaatacattgaagaattattgtagctactcgttacacgttcagggaccaaaatgactatta 65  Q
    ||||| ||||||||||||||||||||  |||||| ||||||||| | | |||||| |||||||||    
T  29223179 atttttatacattgaagaattattgtgactactcattacacgtttaagcaccaaagtgactatta 29223115  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11298518 - 11298455
Alignment:
Q  1 attttaatacattgaagaattattgtagctactcgttacacgttcagggaccaaaatgactattac 66  Q
    ||||| ||||||||| |||||| ||| ||  |||||||||| ||||||||| ||||||||||||||    
T  11298518 attttgatacattgaggaattactgtggc--ctcgttacacattcagggactaaaatgactattac 11298455  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17381348 - 17381283
Alignment:
Q  1 attttaatacattgaagaattattgtagctactcgttacacgttcagggaccaaaatgactattac 66  Q
    ||||| ||||||||||| | ||||||  ||||| | ||||| |||||| |||||||||||||||||    
T  17381348 attttgatacattgaaggactattgtgactacttgctacacattcaggaaccaaaatgactattac 17381283  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 2707820 - 2707856
Alignment:
Q  30 tactcgttacacgttcagggaccaaaatgactattac 66  Q
    |||||||||||| ||||||||||||||||||||||||    
T  2707820 tactcgttacacattcagggaccaaaatgactattac 2707856  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6217685 - 6217749
Alignment:
Q  1 attttaatacattgaagaattattgtagctactcgttacacgttcagggaccaaaatgactatta 65  Q
    ||||| ||||||||| | | |||||| |||| ||| ||||| |||| ||||||||||||||||||    
T  6217685 attttgatacattgagggactattgtggctattcgctacacattcatggaccaaaatgactatta 6217749  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 16127086 - 16127046
Alignment:
Q  29 ctactcgttacacgttcagggaccaaaatgactattactcc 69  Q
    |||||| |||||| || ||||||||||||||||||||||||    
T  16127086 ctactccttacacatttagggaccaaaatgactattactcc 16127046  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29686490 - 29686426
Alignment:
Q  1 attttaatacattgaagaattattgtagctactcgttacacgttcagggaccaaaatgactatta 65  Q
    ||||||||||||||| | ||||||||  |||||| ||| || |||| |||||||| |||||||||    
T  29686490 attttaatacattgagggattattgtgactactcattatacattcatggaccaaagtgactatta 29686426  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 23567361 - 23567409
Alignment:
Q  21 tattgtagctactcgttacacgttcagggaccaaaatgactattactcc 69  Q
    |||||| || ||||||||||| |||||||| ||||||||||||||||||    
T  23567361 tattgtggccactcgttacacattcagggatcaaaatgactattactcc 23567409  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 46848412 - 46848477
Alignment:
Q  1 attttaatacattgaagaattattgtagctactcgttacacgttcagggaccaaaatgactattac 66  Q
    ||||| ||||||||| ||| |||| |  |||||| |||||| ||||||||||||| ||||||||||    
T  46848412 attttgatacattgaggaactattttgactactcattacacattcagggaccaaagtgactattac 46848477  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 43503044 - 43503107
Alignment:
Q  1 attttaatacattgaagaattattgtagctactcgttacacgttcagggaccaaaatgactatt 64  Q
    |||||||||||||||| || ||||||| ||||||||||||  || |||||  ||||||||||||    
T  43503044 attttaatacattgaaaaactattgtaactactcgttacatattaagggaaaaaaatgactatt 43503107  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14804 - 14759
Alignment:
Q  1 attttaatacattgaagaattattgtagctactcgttacacgttca 46  Q
    ||||| ||||||||||| |||||||| |||||||||||||| ||||    
T  14804 attttgatacattgaaggattattgttgctactcgttacactttca 14759  T

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