View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_low_13 (Length: 322)
Name: NF17681_low_13
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 32740477 - 32740227
Alignment:
| Q |
18 |
caattgtaaattgtaattatagacttgtcatattttgatatgttatattcatctaatacaaatatcttttaaagggttatattacaacttacagataatt |
117 |
Q |
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| T |
32740477 |
caattgtaaattgtaattatagacttgtcatattttgatatgttatattcatctaatacaaataacttttaaagggttatattacaacttacagataatt |
32740378 |
T |
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| Q |
118 |
tatttatttattttagaaaagttgcagatgtatactttgttttccagtactgcttccttgttatttgtataaatatgnnnnnnnaataagcaaatgttat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32740377 |
tatttatttattttagaaaagttgcagatgtatactttgttttccagtactgcttccttgttatttgtataaatatgtttttttaataagcaaatgttat |
32740278 |
T |
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| Q |
218 |
acttatataaacctcattgtaatttatgtatccacatatctcttatgtttc |
268 |
Q |
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| T |
32740277 |
acttatataaacctcattgtaatttatgtatccacatatctcttatgtttc |
32740227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 32737964 - 32737774
Alignment:
| Q |
18 |
caattgtaaattgtaattatagacttgtcatattttgatatgttat---------attca--tctaatacaaatatcttttaaagggttatatta----- |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || || |||||| ||||||| |||||||||||||||||| |
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| T |
32737964 |
caattgtaaattgtaattatagacttgtcatattttgatatgttaatactgcagaatgcagatctaatgcaaatatattttaaagggttatattatatta |
32737865 |
T |
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| Q |
102 |
caacttacagataatttatttatttattttagaaaagttgcagatgtatactttgttttccagtactgcttccttgttatttgtataaatatg |
194 |
Q |
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| T |
32737864 |
caacttacagataatttatttattt--tttagaaaagtcacagatatataatttgttttccagtactgcttccttgttatttgtataaatatg |
32737774 |
T |
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