View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_low_17 (Length: 310)
Name: NF17681_low_17
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 22919644 - 22919537
Alignment:
| Q |
1 |
tggatttcaccccctctgcctctgctgatgctggagatgtgtctgctacaaagactctcaagctcaaatctgttaagattgagaaagaggactaaaaata |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22919644 |
tggatttcacctcctctgcctctgctgatgctggagatgtgtctgctacaaagactgtcaagctcaaatctgttaagattgagaaaaaggactaaaaata |
22919545 |
T |
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| Q |
101 |
tgagtccc |
108 |
Q |
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|||||||| |
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| T |
22919544 |
tgagtccc |
22919537 |
T |
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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 3523780 - 3523673
Alignment:
| Q |
1 |
tggatttcaccccctctgcctctgctgatgctggagatgtgtctgctacaaagactctcaagctcaaatctgttaagattgagaaagaggactaaaaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||||||| |||||||| | || |
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| T |
3523780 |
tggatttcaccccctctgcctctgctgatgctggagatgcgtctgctataaagactgtcaagctcaaatgtgttaagattgagaaaaaggactaagacta |
3523681 |
T |
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| Q |
101 |
tgagtccc |
108 |
Q |
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|||||||| |
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| T |
3523680 |
tgagtccc |
3523673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 3810919 - 3810817
Alignment:
| Q |
196 |
cttgattcttgaagcgcataaatcaaattggagtaacacttctgcaannnnnnnaaggtgaaaacaatatcattaataatgaaagtagcaaggattaaat |
295 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810919 |
cttgattcttgaagcgtataaatcaaattggagtaacacttctgcaatttttttaaggtgaaaacaatatcattaataatgaaagtagcaaggattaaat |
3810820 |
T |
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| Q |
296 |
cct |
298 |
Q |
| |
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||| |
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| T |
3810819 |
cct |
3810817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 18004399 - 18004457
Alignment:
| Q |
25 |
ctgatgctggagatgtgtctgctacaaagactctcaagctcaaatctgttaagattgag |
83 |
Q |
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|||||||||||||| | |||||||||||| || |||||||||||||||||||||||||| |
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| T |
18004399 |
ctgatgctggagatttctctgctacaaagtctgtcaagctcaaatctgttaagattgag |
18004457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 18004294 - 18004347
Alignment:
| Q |
21 |
tctgctgatgctggagatgtgtctgctacaaagactctcaagctcaaatctgtt |
74 |
Q |
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|||||||||||||||||||| |||||||| ||| | ||||||||||||||||| |
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| T |
18004294 |
tctgctgatgctggagatgtctctgctactaagcttgtcaagctcaaatctgtt |
18004347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 16804155 - 16804217
Alignment:
| Q |
21 |
tctgctgatgctggagatgtgtctgctacaaagactctcaagctcaaatctgttaagattgag |
83 |
Q |
| |
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|||||||||||||||||| | ||| |||||||| || |||||||||||| ||||||||||||| |
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| T |
16804155 |
tctgctgatgctggagatttctctactacaaagcctgtcaagctcaaatatgttaagattgag |
16804217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 16804053 - 16804106
Alignment:
| Q |
21 |
tctgctgatgctggagatgtgtctgctacaaagactctcaagctcaaatctgtt |
74 |
Q |
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|||||||||| || |||||| |||||||| ||| || ||||||||||||||||| |
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| T |
16804053 |
tctgctgatgttgtagatgtctctgctactaagcctgtcaagctcaaatctgtt |
16804106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 47735457 - 47735519
Alignment:
| Q |
21 |
tctgctgatgctggagatgtgtctgctacaaagactctcaagctcaaatctgttaagattgag |
83 |
Q |
| |
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|||| ||||||||||||| | |||||||| ||| || |||||||||||||||||||||||||| |
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| T |
47735457 |
tctgttgatgctggagatttctctgctacgaagcctgtcaagctcaaatctgttaagattgag |
47735519 |
T |
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