View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_low_18 (Length: 300)
Name: NF17681_low_18
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 3701023 - 3700851
Alignment:
| Q |
76 |
gcaaatatacggaacacccatacaaccctcaaaccaaaattgaggccgacatatacttgcgaaaaacaccgcacgcatacccctgcctcaccaccagaag |
175 |
Q |
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| T |
3701023 |
gcaaatatacggaacacccatacaaccctcaaaccagaattgaggccgacatatacgtgcgaaaaacaccgcacgcatacccctacctcaccaccagaag |
3700924 |
T |
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| Q |
176 |
acagagaagcaccaaaaagcccgaaactgcccagccaccaatcaaaacaggaacactccaacatatggaagca |
248 |
Q |
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| T |
3700923 |
acagagaagcaccaaaaagcccgaaactgcccagccaccaatcaaaacagaaacactccaacatatggaagca |
3700851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 87550 - 87503
Alignment:
| Q |
115 |
ttgaggccgacatatacttgcgaaaaacaccgcacgcatacccctgcct |
163 |
Q |
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| T |
87550 |
ttgaggccgacatatacatgc-aaaaataccgcacgcatacccctgcct |
87503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 37737924 - 37737850
Alignment:
| Q |
17 |
aaaatgcaagacgcattaaacactcgcgggtaaagaaggaacaatacaaaaaaggtgccgcaaatatacggaacacc |
93 |
Q |
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| T |
37737924 |
aaaatgcaagacacattaaat-ctcgcgg-taaagaagaaacaatacaaataagatgctgcatatatacagaacacc |
37737850 |
T |
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