View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_low_2 (Length: 598)
Name: NF17681_low_2
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 10 - 583
Target Start/End: Complemental strand, 19797439 - 19796868
Alignment:
| Q |
10 |
ataatacttgcaggggcatgatttttcaaaacccactttaacatatcaaacatgatgactttgtacacatctgaaataaaaacaccattataaatatgga |
109 |
Q |
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| T |
19797439 |
ataatacttgcaggggcatgatttttcaaaacccactttaacatatcaaacatgatgactttgtacacatctgaaataaaaacaccattataaatatgga |
19797340 |
T |
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| Q |
110 |
gaagttcataaaacgtgattaattatgaatgaataagtaaatacctccactggggacgtgacatagggggatatgcctgcggtggagagtgcatgttgaa |
209 |
Q |
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| T |
19797339 |
gaagttcataaaatgtgattaattatgaatgaataagtaaatacctccactggggacgtgacatagggggat--gcctgcggtggagagtgcatgttgaa |
19797242 |
T |
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| Q |
210 |
gcccactagcgatgagatttgtgtttccataagcagaaatggatagtttgccacgaaggttgggttttaagagagccaatcgaatattattaacaatgca |
309 |
Q |
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| T |
19797241 |
gcccactagcgatgagatttgtgtttccataagcagaaatggatagtttgccacgaaggttggcttttaagagagctaatcgaatattattaacaatgca |
19797142 |
T |
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| Q |
310 |
gtcaatactgtgaaagtttgttggaatttgacaatttccaacgtcccaccaaactgagatatttgtatttgcattttccatagtcatctacaagtcaaat |
409 |
Q |
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| T |
19797141 |
gtcaatactgtcaaagtttgttggaatttggcaatttccaacgtcccaccaaactgagatatttgtatttgcattttccatagtcatctacaagtcaaat |
19797042 |
T |
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| Q |
410 |
tataaaatggtgagaagggatggttgtgatgatttttacaactccattcaatttgaaatttcttgaaaagaggattcaaaaaatttgagacctagttttt |
509 |
Q |
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| T |
19797041 |
tataaaatggtgagaagggatggttgtgatgatttttgcaactccattcaatttgaaatttcttgaaaagaggattcaaaaaatttgagacctagttttt |
19796942 |
T |
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| Q |
510 |
gagttgtgtttgggttgataaatgaattccataccatacatagggtttagattttgaaggttacctgttgaatt |
583 |
Q |
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| T |
19796941 |
gagttgtgtttgggttgataaatgaattccataccatacatagggtttagattttgaaggttacctgctgaatt |
19796868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 19796483 - 19796426
Alignment:
| Q |
214 |
actagcgatgagatttgtgtttccataagcagaaatggatagtttgccacgaaggttg |
271 |
Q |
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| T |
19796483 |
actagggatgagatcggagtttccataagcagaaatggttagtctgccatgaaggttg |
19796426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 19796365 - 19796309
Alignment:
| Q |
329 |
gttggaatttgacaatttccaacgtcccaccaaactgagatatttgtatttgcattt |
385 |
Q |
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| T |
19796365 |
gttggaaattgacaggtttcaatgtcccaccaaactgaaatatttgcatttgcattt |
19796309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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