View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_low_20 (Length: 287)
Name: NF17681_low_20
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_low_20 |
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| [»] scaffold0087 (6 HSPs) |
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Alignment Details
Target: scaffold0087 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 3563 - 3810
Alignment:
| Q |
15 |
ttattctcagttcttcaattcattctacttcacaattcagttaactactttatccctttcattaaaataaaccaaaaatatttcaagaggagtagatctc |
114 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3563 |
ttattctcagttcttcaattcattccacttcacaattcagttaactactttatccctttcattaaaataaaccaaaaatatttcaaaaggagtagatctc |
3662 |
T |
|
| Q |
115 |
aataatgctttgttttgggtacaattttctcttttgtttggtgtcctttctatgttttaatgtgttatgtgttgaaagtttccataagaacaagtgtgtg |
214 |
Q |
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|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
3663 |
aataatgctttattttgggtacaaatttctcttttgtttggtgtcctttctatgttttaatgtgttatgtgcagaaagttttcatacaaacaagtgtgtg |
3762 |
T |
|
| Q |
215 |
gagacagagaggagagccctgctcaagtttaaagatgctctcactctt |
262 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||||||| ||| |||| |
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|
| T |
3763 |
gagacagagaggagagctctcctcaagtttagagatgctatcaatctt |
3810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 11039 - 11286
Alignment:
| Q |
15 |
ttattctcagttcttcaattcattctacttcacaattcagttaactactttatccctttcattaaaataaaccaaaaatatttcaagaggagtagatctc |
114 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
11039 |
ttattctcagttcttcaattcattccacttcacaattcagttaactactttatccctttgattaaaataaaccaaaaatatttcaaaaggagtagatctc |
11138 |
T |
|
| Q |
115 |
aataatgctttgttttgggtacaattttctcttttgtttggtgtcctttctatgttttaatgtgttatgtgttgaaagtttccataagaacaagtgtgtg |
214 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
11139 |
aataatgctttgttttgggtacaaatttctcttttgtttggtgtcctttctatgttttaatgtgttatgtgcagaaagttttcatacaaacaagtgtgtg |
11238 |
T |
|
| Q |
215 |
gagacagagaggagagccctgctcaagtttaaagatgctctcactctt |
262 |
Q |
| |
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|||| |||||||||||| || |||||||||| ||||||| ||| |||| |
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|
| T |
11239 |
gagaaagagaggagagctctcctcaagtttagagatgctatcaatctt |
11286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 28409 - 28656
Alignment:
| Q |
15 |
ttattctcagttcttcaattcattctacttcacaattcagttaactactttatccctttcattaaaataaaccaaaaatatttcaagaggagtagatctc |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28409 |
ttattctcagttcttcaattcattccacttcacaattcagttaactacattatccctttcattaaaataaaccaaaaatatttcaaaaggagtagatctc |
28508 |
T |
|
| Q |
115 |
aataatgctttgttttgggtacaattttctcttttgtttggtgtcctttctatgttttaatgtgttatgtgttgaaagtttccataagaacaagtgtgtg |
214 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
28509 |
aataatgctttgttttgggtacaaatttctcttttgtttggtgtcctttctatgttttaatgtgttatgtgcagaaagttttcatacaaacaagtgtgtg |
28608 |
T |
|
| Q |
215 |
gagacagagaggagagccctgctcaagtttaaagatgctctcactctt |
262 |
Q |
| |
|
|||| |||||||||||| || |||||||||| ||||||| ||| |||| |
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|
| T |
28609 |
gagaaagagaggagagctctcctcaagtttagagatgctatcaatctt |
28656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 32423 - 32666
Alignment:
| Q |
33 |
ttcattctacttcacaattcagttaactactttatccctttcattaaaataaaccaaaaatatttcaa---gag--gagtagatctcaataatgctttgt |
127 |
Q |
| |
|
||||||| ||| |||||||||||||| ||| | | ||||| ||| ||||||||||||||||||| | ||| ||||||||| |||||||||||| | |
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| T |
32423 |
ttcattccactccacaattcagttaataactctgtacctttgattggaataaaccaaaaatatttccaagtgagttgagtagatcgcaataatgctttat |
32522 |
T |
|
| Q |
128 |
tttgggtacaattttctcttttgtttggtgtcctttctatgttttaatgtgttatgtgttgaaagtttccataagaacaagtgtgtggagacagagagga |
227 |
Q |
| |
|
| ||||| |||||||||||||||| ||||| || ||||||| | ||| ||||||||| |||| ||| ||||| ||||||||||||||||||||||||| |
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|
| T |
32523 |
tgtgggttcaattttctcttttgtgtggtggccattctatgcatcaatttgttatgtgcagaaatttttcataaaaacaagtgtgtggagacagagagga |
32622 |
T |
|
| Q |
228 |
gagccctgctcaagtttaaagatgctctcactcttggaaggaac |
271 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32623 |
gagccctgctcaagtttaaagatgctctcattcttggaaggaac |
32666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 38668 - 38736
Alignment:
| Q |
189 |
aaagtttccataagaacaagtgtgtggagacagagaggagagccctgctcaagtttaaagatgctctca |
257 |
Q |
| |
|
||||||| || | |||||||||||| |||||||||||| |||| || |||||||||||||||||||||| |
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|
| T |
38668 |
aaagttttcaaatgaacaagtgtgttgagacagagaggcgagctctactcaagtttaaagatgctctca |
38736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 25320 - 25382
Alignment:
| Q |
189 |
aaagtttccataagaacaagtgtgtggagacagagaggagagccctgctcaagtttaaagatg |
251 |
Q |
| |
|
||||| |||||| ||||||||| |||||||||||||||| || || |||||||||| ||||| |
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|
| T |
25320 |
aaagtatccatatgaacaagtgcgtggagacagagaggaatgctctcctcaagtttagagatg |
25382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 5851213 - 5851460
Alignment:
| Q |
15 |
ttattctcagttcttcaattcattctacttcacaattcagttaactactttatccctttcattaaaataaaccaaaaatatttcaagaggagtagatctc |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
5851213 |
ttattctcagttcttcaattcattccacttcacaattcagttaactactttatccctttgattaaaataaaccaaatatatttcataaggagtagatctc |
5851312 |
T |
|
| Q |
115 |
aataatgctttgttttgggtacaattttctcttttgtttggtgtcctttctatgttttaatgtgttatgtgttgaaagtttccataagaacaagtgtgtg |
214 |
Q |
| |
|
||||||||||| || ||||| ||| || ||||||||||||||| || ||||||| | || || ||||| ||| ||| |||| |||||||||||| |
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|
| T |
5851313 |
aataatgctttattgtgggttcaaattactcttttgtttggtgaccattctatgcatcaactggtcatgtgcagaagattttcatacaaacaagtgtgtg |
5851412 |
T |
|
| Q |
215 |
gagacagagaggagagccctgctcaagtttaaagatgctctcactctt |
262 |
Q |
| |
|
|||| ||||| |||||| || |||||||||| ||||||| ||| |||| |
|
|
| T |
5851413 |
gagaaagagaagagagctctcctcaagtttagagatgctatcaatctt |
5851460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 5828300 - 5828543
Alignment:
| Q |
33 |
ttcattctacttcacaattcagttaactactttatccctttcattaaaataaaccaaaaatatttcaa---gag--gagtagatctcaataatgctttgt |
127 |
Q |
| |
|
||||||| ||| |||||||||||||| ||| | ||||||| ||| ||||||||||||||||||| | ||| ||||||||| |||||||||||| | |
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|
| T |
5828300 |
ttcattccactacacaattcagttaataactctgtccctttgattggaataaaccaaaaatatttccaagtgagttgagtagatcgcaataatgctttat |
5828399 |
T |
|
| Q |
128 |
tttgggtacaattttctcttttgtttggtgtcctttctatgttttaatgtgttatgtgttgaaagtttccataagaacaagtgtgtggagacagagagga |
227 |
Q |
| |
|
| ||||| |||||||||||||||| || || || ||||||| | ||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
5828400 |
tgtgggttcaattttctcttttgtgtgctggccattctatgcatgaatttgttatgtgcagaaagttttcataaaaacaagtgtgtggagacagagagga |
5828499 |
T |
|
| Q |
228 |
gagccctgctcaagtttaaagatgctctcactcttggaaggaac |
271 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
5828500 |
gagctctgctcaagtttaaagatgctctccttcttgaaaggaac |
5828543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 271
Target Start/End: Complemental strand, 5891855 - 5891714
Alignment:
| Q |
130 |
tgggtacaattttctcttttgtttggtgtcctttctatgttttaatgtgttatgtgttgaaagtttccataagaacaagtgtgtggagacagagaggaga |
229 |
Q |
| |
|
||||| |||||||||| ||| | ||||| | ||||||| | ||| ||||||||| ||||||||| |||| ||||||||||||||| ||||| | | |
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|
| T |
5891855 |
tgggttcaattttctcctttatgtggtgacaattctatgcatgaatttgttatgtgctgaaagttttcatatgaacaagtgtgtggaaacagacttgcaa |
5891756 |
T |
|
| Q |
230 |
gccctgctcaagtttaaagatgctctcactcttggaaggaac |
271 |
Q |
| |
|
|| || || ||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
5891755 |
gctctccttaagttcaaaaatgctctcattcttggaaggaac |
5891714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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