View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_low_22 (Length: 264)
Name: NF17681_low_22
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 34995616 - 34995846
Alignment:
| Q |
19 |
atgccctaccacttttttcttattaaaggcatagcaggacatgttctaacacatttacattcnnnnnnnnn----attgaatacttgtagtgggataaac |
114 |
Q |
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| T |
34995616 |
atgccctaacacttttttcttattaaaggcatagcaggacatgttctaacacatttacattctttttttttttttattgaatacttgtagtgggataaac |
34995715 |
T |
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| Q |
115 |
tttcagaaaaccttgctattcaagaattcgcatgcatgctcactggcaaacatccagagaatcgtgtttctttgcttagcgcaagtgtaagttcaatcct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34995716 |
tttcagaaaaccttgctattcaagaattcgcatgcatgctcactggcaaacatccagagaatcgtgtttctttgcttagcgcaagtgtaagttcaatcct |
34995815 |
T |
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| Q |
215 |
tatttactaccaccaatattccttttcagttcat |
248 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
34995816 |
tatt---taccaccaatattccttttcagttcat |
34995846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 34987225 - 34987427
Alignment:
| Q |
19 |
atgccctaccacttttttcttattaaaggcatagcaggacatgttctaacacatttacattcnnnnnnnnnattgaatacttgtagtgggataaactttc |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| ||| |
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| T |
34987225 |
atgccctaacacttttttcttattaaaggcatagcaggacatgttctaacacatttacattctttgtttttattgaataattatagtgggataaacattc |
34987324 |
T |
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| Q |
119 |
agaaaaccttgctattcaagaattcgcatgcatgctcactggcaaacatccagagaatcgtgtttctttgcttagcgcaagtgtaagttcaatccttatt |
218 |
Q |
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| T |
34987325 |
acaaaacctttctattcgagaattcgcatgcattctcaccggcaaacatccagagaatcgtgtttctttgcttagagcaagggtaagtttaatccttatt |
34987424 |
T |
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| Q |
219 |
tac |
221 |
Q |
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||| |
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| T |
34987425 |
tac |
34987427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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