View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17681_low_27 (Length: 243)
Name: NF17681_low_27
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_low_27 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 32609080 - 32609305
Alignment:
| Q |
18 |
atattaagcatcaacaataatctaagaaaggactttcatctatataagaaatagagacatgagtaaaagaggaggctaaaataagaggtgaaccgaaaaa |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32609080 |
atattaagcatcaacaataatataagaaaggactttcatctatataagaaatagagacatgagtaaaagaggaggctaaaataagaggtgaaccgaaaaa |
32609179 |
T |
|
| Q |
118 |
ggaagagaggagaaaaatgtagagattcatagaactcgagtcatattcaccaccacctccattctcaccatcttctacaaatcatcatcactcccactga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32609180 |
agaagagaggagaaaaatgtagagattcatagaactcgagtcatattcaccaccacctccattctcaccatcttctacaaatcatcatcactcccactga |
32609279 |
T |
|
| Q |
218 |
aaaatcagtaacacaaatcttcatgc |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32609280 |
aaaatcagtaacacaaatcttcatgc |
32609305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University