View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17681_low_3 (Length: 575)

Name: NF17681_low_3
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17681_low_3
NF17681_low_3
[»] scaffold0012 (6 HSPs)
scaffold0012 (205-442)||(151796-152033)
scaffold0012 (57-207)||(152641-152791)
scaffold0012 (447-560)||(151570-151682)
scaffold0012 (51-180)||(148543-148674)
scaffold0012 (84-162)||(167645-167723)
scaffold0012 (50-131)||(151437-151518)
[»] chr6 (7 HSPs)
chr6 (76-198)||(34504760-34504883)
chr6 (122-204)||(34271160-34271245)
chr6 (122-207)||(34273721-34273809)
chr6 (382-442)||(34506569-34506629)
chr6 (149-207)||(34262771-34262832)
chr6 (460-503)||(34506388-34506431)
chr6 (303-373)||(34506666-34506737)


Alignment Details
Target: scaffold0012 (Bit Score: 167; Significance: 4e-89; HSPs: 6)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 205 - 442
Target Start/End: Complemental strand, 152033 - 151796
Alignment:
Q  205 gaaacaatatcatctttctataaatctcaatagtgggtaattgtctgtacttgttgaatgaataaatttcaatcctatgacnnnnnnnnnnnnnnnnnga 304  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||                 ||    
T  152033 gaaacaatatcatctttctataaatctcaatagtgggtaattatctgtacttgttgaatgaataaatttcaatcctatgacaaaaaaataaaataaaaga 151934  T
Q  305 ataactagaattggcgagtagcaagatctgatacttgcttccgaaaaacaaaaagatatcgcagtggttacgttgtgggagagaatctgaaaatgttacc 404  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  151933 ataactagaattggcgagtagcaagatctgatacttgcttccaaaaaacaaaaagatatcgcagtggttacgttgtgggagagaatctgaaaatgttacc 151834  T
Q  405 ttcagaacaaaaatcatgttcttctgccgaatccgaat 442  Q
    ||||||||||||||||||||||| |||  |||||||||    
T  151833 ttcagaacaaaaatcatgttcttttgctcaatccgaat 151796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 152791 - 152641
Alignment:
Q  57 caagtaatgtatgtaactcaagtaaatattcatcatattagtatctatgtccatatttgtgagcatttccattaaataatgtttgtgatgttgattaatc 156  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  152791 caagtaatgtatgtaactcaagtaaatattcatcataatagtatctatctccatatttgtgagcatttccattaaataatgtttgtgatgttgattaatc 152692  T
Q  157 aagttaactaattccaacattattctgtatgattgattgattgattatgaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  152691 aagttaactaattccaacattattctgtatgattgattgattgattatgaa 152641  T

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Target: scaffold0012; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 447 - 560
Target Start/End: Complemental strand, 151682 - 151570
Alignment:
Q  447 atatatagatactcacgaggtttcatattaaacacaatattgaaaaagattgcgaacnnnnnnnncctcacaagaaaatgatcaagttaggcctatttat 546  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||    
T  151682 atatatagatactcacgaggtttcatattaaacacaatattgaaaaagattgcgaacttttctttcctcacaagaaaatgatcaagtta-gcctatttat 151584  T
Q  547 tgtcatcacctttg 560  Q
    ||||||||||||||    
T  151583 tgtcatcacctttg 151570  T

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Target: scaffold0012; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 148674 - 148543
Alignment:
Q  51 ttcaaacaagtaatgtatgtaactca--agtaaatattcatcatattagtatctatgtccatatttgtgagcatttccattaaataatgtttgtgatgtt 148  Q
    ||||||||| | || |||||||||||  || ||||||||||||| ||||||||||| | ||||||  |||| ||||||||||||||||||||||||||||    
T  148674 ttcaaacaattcatatatgtaactcataagcaaatattcatcatcttagtatctatctacatattcatgagtatttccattaaataatgtttgtgatgtt 148575  T
Q  149 gattaatcaagttaactaattccaacattatt 180  Q
    |||||||| |||||||| || |||||||||||    
T  148574 gattaatcgagttaactgatgccaacattatt 148543  T

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Target: scaffold0012; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 167723 - 167645
Alignment:
Q  84 attcatcatattagtatctatgtccatatttgtgagcatttccattaaataatgtttgtgatgttgattaatcaagtta 162  Q
    ||||||||||||||||||||| | ||||||  |||| |||||||||||||||||||||||||||||||||||| |||||    
T  167723 attcatcatattagtatctatctacatattcatgagtatttccattaaataatgtttgtgatgttgattaatcgagtta 167645  T

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Target: scaffold0012; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 151518 - 151437
Alignment:
Q  50 attcaaacaagtaatgtatgtaactcaagtaaatattcatcatattagtatctatgtccatatttgtgagcatttccattaa 131  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||||| |||||| | ||||||  |||| |||||||||||    
T  151518 attcaaacaattaatatatgtaactcaagcaaatattcatcatattagaatctatctacatattcatgagtatttccattaa 151437  T

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Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 34504883 - 34504760
Alignment:
Q  76 aagtaaatattcatcatattagtatctatgtccatatttgtgagcatttccattaaataatgtttgtgatgttgattaatcaagttaacta--attccaa 173  Q
    ||||||||||||||||||||| ||||||| | ||||||   ||| |||||||||||||||| ||| |||||||||||||||||||||||||  ||| |||    
T  34504883 aagtaaatattcatcatatta-tatctatatacatattcaagagtatttccattaaataatttttatgatgttgattaatcaagttaactaatattgcaa 34504785  T
Q  174 cattattctgtatgattgattgatt 198  Q
    ||||||| |||||||||||||||||    
T  34504784 cattattttgtatgattgattgatt 34504760  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 34271245 - 34271160
Alignment:
Q  122 tttccattaaataatgtttgtgatgttgattaatcaagttaac---taattccaacattattctgtatgattgattgattgattat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||| |||||||||||| ||||||||||    
T  34271245 tttccattaaataatgtttgtgatgttgattaatcaagttaactaataatgccaacattattttgtatgattgatcgattgattat 34271160  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 34273721 - 34273809
Alignment:
Q  122 tttccattaaataatgtttgtgatgttgattaatcaagttaactaattc---caacattattctgtatgattgattgattgattatgaa 207  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||     ||||||| || ||| ||||||||||||||||||||||    
T  34273721 tttccattaaacaatgtttgtgatgttgattaatcaagttaattaataatggcaacatttttttgtgtgattgattgattgattatgaa 34273809  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 442
Target Start/End: Complemental strand, 34506629 - 34506569
Alignment:
Q  382 ggagagaatctgaaaatgttaccttcagaacaaaaatcatgttcttctgccgaatccgaat 442  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||    
T  34506629 ggagagaatctgaaaatggtatcttcagaacaagaatcatgttcttctgcccaatccgaat 34506569  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 34262832 - 34262771
Alignment:
Q  149 gattaatcaagttaact---aattccaacattattctgtatgattgattgattgattatgaa 207  Q
    ||||||||||||| |||   ||| ||||||||||| ||||||||||||||||| ||||||||    
T  34262832 gattaatcaagtttacttataatgccaacattattttgtatgattgattgattaattatgaa 34262771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 503
Target Start/End: Complemental strand, 34506431 - 34506388
Alignment:
Q  460 cacgaggtttcatattaaacacaatattgaaaaagattgcgaac 503  Q
    |||||| ||||||||||||||  |||||||||||||||||||||    
T  34506431 cacgagatttcatattaaacaacatattgaaaaagattgcgaac 34506388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 34506737 - 34506666
Alignment:
Q  303 gaataactagaattggcgagtagcaagatctgatacttgcttccgaaaaaca-aaaagatatcgcagtggtt 373  Q
    |||||||||||||||| | ||||||| ||||| ||||||||||| | | ||| |||||||||| ||||||||    
T  34506737 gaataactagaattggtgtgtagcaatatctggtacttgcttccaagatacataaaagatatcacagtggtt 34506666  T

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