View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_low_35 (Length: 234)
Name: NF17681_low_35
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5053504 - 5053722
Alignment:
| Q |
1 |
tgaatccaactttctttatataataagtagttgtttcactgctccatttcacaattctcttatgctggctctcaaaaggggtttggttttggtcttcata |
100 |
Q |
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| T |
5053504 |
tgaatccaactttctttatataatcagtggttgtttcactgctccatttcacaattctcttatattggctctcaaaaggggtttggttttggtcttcata |
5053603 |
T |
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| Q |
101 |
tggttggttgattcacagtcaagaaatcaaatcattgtgttcttggaagggagttccgattaacaagacaataagttacaaag--cacagtcaatggcat |
198 |
Q |
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| T |
5053604 |
tggttggttgattcacagccaagaaatcaaatcattgtattcttggaagggagttccgattaacgagacaataagttacaaagaacacagtcaatggcat |
5053703 |
T |
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| Q |
199 |
gaaaaatgagcttataatt |
217 |
Q |
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||||||||||||||||||| |
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| T |
5053704 |
gaaaaatgagcttataatt |
5053722 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 30767819 - 30767911
Alignment:
| Q |
1 |
tgaatccaactttctttatataataagtagttgtttcactgctccatttcacaattctcttatgctggctctcaaaaggggtttggttttggt |
93 |
Q |
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|||||||||||||||||||||||| | | ||||||||| || |||| ||| ||||||| | || ||| |||||||| |||||||||||||| |
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| T |
30767819 |
tgaatccaactttctttatataatcattggttgtttcattgttccaattctcaattctatgatattggttctcaaaaaaggtttggttttggt |
30767911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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