View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_low_6 (Length: 457)
Name: NF17681_low_6
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 239 - 441
Target Start/End: Original strand, 25301008 - 25301210
Alignment:
| Q |
239 |
ttaataagagtgacactaatgaattttccaccatcttagaatcgtgttacaaagtccaagtcttcacaacataaataatttgaacaacactttatgtatt |
338 |
Q |
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| T |
25301008 |
ttaataagactgacactaatgaattttccaccatcttagaatcgtgttacaaagtccaagtcttcacaacataaataatttgaacaacactttatgtatt |
25301107 |
T |
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| Q |
339 |
agtaacttgtttgagtttcatgcgaaaatttccttctcaataaattataccaaaacaatatcctctcactattatgatcacttgaaagttgaatccaaaa |
438 |
Q |
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| T |
25301108 |
agtaacttgtttgggtttcatgcgaaaatttccttctcaataaattataccaaaaaaatatcctctcactattatgatcacttgaaagttgaatccaaaa |
25301207 |
T |
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| Q |
439 |
tat |
441 |
Q |
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||| |
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| T |
25301208 |
tat |
25301210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 25300805 - 25300994
Alignment:
| Q |
13 |
aatatgggatcataatataaatatgatgtaactggagagttcatcatgactataaccatgtcacgataaagtctaaaagaccggagaagattgagtcact |
112 |
Q |
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| T |
25300805 |
aatatgggatcataatagaaatatgatgtaattggagag---atcatgactataaccatgtcatgataaagtttaaaagaccggagaagattgagtcact |
25300901 |
T |
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| Q |
113 |
cgttcatgactcaattttctatgtctttattaaagagaagacattatctatatatttaagctattcaattatttaattacactgctattatct |
205 |
Q |
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| T |
25300902 |
cgttcatgactcaattttctatgtctttattaaagagaatacattatctatatatttaagctattcaattatttaattacactgctattatct |
25300994 |
T |
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