View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17681_low_7 (Length: 443)
Name: NF17681_low_7
Description: NF17681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17681_low_7 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 15 - 425
Target Start/End: Complemental strand, 35877404 - 35876994
Alignment:
| Q |
15 |
aatatcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35877404 |
aatatcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatc |
35877305 |
T |
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| Q |
115 |
tcatcagcataaagtgtcctatcaccaagtcttgcttcaacatattttagataagcacaacgtcttatcaaccttcttaaaacatcttctcttgaattga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35877304 |
tcatcagcataaagtgtcctatcaccaagtcttgcttcaacatattttagataagcacaacgtcttatcaaccttcttaaaacatcttctcttgaattga |
35877205 |
T |
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| Q |
215 |
tcacatcgaagagatgttcagctgttgatctatctattgctcttcctgctcttctccatattctgatttgtactttgtctctaaattgaccataactgtc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35877204 |
tcacatcgaagagatgttcagctgttgatctatctattgctcttcctgctcttctccatattctgatttgtactttgtctctaaattgaccataactgtc |
35877105 |
T |
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| Q |
315 |
ttgtaaaagtgctgcaaaaacacttccccaagcacctgctccaatacacacaattcttaatggatcaccattagttttactaattagtctcctaaactca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35877104 |
ttgtaaaagtgctgcaaaaacacttccccaagcacctgctccaatacacacaattcttaatggatcaccattagttttactaattagtctcctaaactca |
35877005 |
T |
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| Q |
415 |
tcaagtttctc |
425 |
Q |
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| T |
35877004 |
tcaagtttctc |
35876994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 192731 - 192369
Alignment:
| Q |
19 |
tcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatctcat |
118 |
Q |
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||||||||||| |||||||| || || || || ||||| |||||||| |||||||| ||||||| ||||||||||||||| |||||||| | |||||||| |
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| T |
192731 |
tcagcatcccatacagcttcctgtaagttcgtcacaaccttcaaagggcaaacaggtgtatcaaccatattcaaacaaaacccatctttcaaaatctcat |
192632 |
T |
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| Q |
119 |
cagcataaagtgtcctatcaccaagtcttgcttcaacatattttagataagcacaacgtcttatcaaccttcttaaaacatcttctcttgaattgatcac |
218 |
Q |
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| T |
192631 |
ctgcatgaagaaccctatcacctaatcttccctcgacatatttcaaatacgcacaccgcctaatcaacctcctcaacacatcctccctcgaattgatcac |
192532 |
T |
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| Q |
219 |
atcgaagagatgttcagctgttgatctatctattgctcttcctgctcttctccatattctgatttgtactttgtctctaaattgaccataactgtcttgt |
318 |
Q |
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| T |
192531 |
ttcaaacaaatgcgtagccgtggctctatcaaccgctcttcctggtcttctccatatcctaatcaaaaccttatctctaaaactaccataagcatcttgt |
192432 |
T |
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| Q |
319 |
aaaagtgctgcaaaaacacttccccaagcacctgctccaatacacacaattcttaatggatca |
381 |
Q |
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| T |
192431 |
aacatagctgtaaacacactaccccaagcaccacctccaacacaaactattctcaatggatca |
192369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 14624652 - 14625014
Alignment:
| Q |
19 |
tcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatctcat |
118 |
Q |
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||||||||||| |||||||| || || || || ||||| |||||||| |||||||| ||||||| ||||||||||||||| |||||||| | |||||||| |
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| T |
14624652 |
tcagcatcccatacagcttcctgtaagttcgtcacaaccttcaaagggcaaacaggtgtatcaaccatattcaaacaaaacccatctttcaaaatctcat |
14624751 |
T |
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| Q |
119 |
cagcataaagtgtcctatcaccaagtcttgcttcaacatattttagataagcacaacgtcttatcaaccttcttaaaacatcttctcttgaattgatcac |
218 |
Q |
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| T |
14624752 |
ctgcatgaagaaccctatcacctaatcttccctcgacatatttcaaatacgcacaccgcctaatcaacctcctcaacacatcctccctcgaattgatcac |
14624851 |
T |
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| Q |
219 |
atcgaagagatgttcagctgttgatctatctattgctcttcctgctcttctccatattctgatttgtactttgtctctaaattgaccataactgtcttgt |
318 |
Q |
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| T |
14624852 |
ttcaaacaaatgcgtagccgtggctctatcaaccgctcttcctggtcttctccatatcctaatcaaaaccttatctctaaaactaccataagcatcttgt |
14624951 |
T |
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| Q |
319 |
aaaagtgctgcaaaaacacttccccaagcacctgctccaatacacacaattcttaatggatca |
381 |
Q |
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|| | |||| ||| ||||| ||||||||||| |||||| ||| || ||||| ||||||||| |
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| T |
14624952 |
aacatagctgtaaacacactaccccaagcaccacctccaacacaaactattctcaatggatca |
14625014 |
T |
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