View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_high_11 (Length: 326)
Name: NF17682_high_11
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_high_11 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 150 - 326
Target Start/End: Original strand, 25358641 - 25358817
Alignment:
| Q |
150 |
atagaaaacattaatctatagcaacttctcaggtttgattttgtgctaaaaagacaaaccttagacaggagattctggattcaagtccagctgatgtctc |
249 |
Q |
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| T |
25358641 |
atagaaaacattaatctatagcaacttctcaggtttgatttagtgctaaaaagacaaaccttagacaggagattctggattcaagtccagctgatgtctc |
25358740 |
T |
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| Q |
250 |
tttgtaagttgtttttaagccttcagatctttctcctttgaactagagacatgnnnnnnngttagttaaaataatga |
326 |
Q |
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| T |
25358741 |
tttgtaagttgtttttaagccttcagatctttctcctttgaactagagacatgtttttttgttagttaaaataatga |
25358817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 25358420 - 25358496
Alignment:
| Q |
13 |
ataatacttaatgataaaatgcaaccaagaaatataatagtttatattctaaaaacttgatgaaaatatatattatt |
89 |
Q |
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| T |
25358420 |
ataatacttaatgataaaatgcaaccaagaaatgtaatagtttatattctaaaaacttgatgaaaatatatattatt |
25358496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 25358615 - 25358657
Alignment:
| Q |
90 |
ctcaaaacaaagataaccaaacttcaatagaaaacattaatct |
132 |
Q |
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| T |
25358615 |
ctcaaaacaaagataaccaaacttcaatagaaaacattaatct |
25358657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 25353785 - 25353847
Alignment:
| Q |
27 |
taaaatgcaaccaagaaatataatagtttatattctaaaaacttgatgaaaatatatattatt |
89 |
Q |
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| T |
25353785 |
taaaatgcagccaacaaatctgatagtttacattctaaaaacttgctgaaaatatatattatt |
25353847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 25354122 - 25354177
Alignment:
| Q |
201 |
agacaaaccttagacaggagattctggattcaagtccagctgatgtctctttgtaa |
256 |
Q |
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| T |
25354122 |
agacaaaccttagataggagattctggattcaagttccgttaatgtctctttgtaa |
25354177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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