View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_high_19 (Length: 287)
Name: NF17682_high_19
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 32812836 - 32812569
Alignment:
| Q |
1 |
atagtataatatccttcttatgataaactactggacaacaatacttaggcttcccccatggatactccacctcttcaaaccctaacctccaccatgaaga |
100 |
Q |
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| T |
32812836 |
atagtataatatccttcttatgataaaccactggacaacaatacttaggcttcccccatggatactccacctcttcaaaccctaacctccaccatgaaga |
32812737 |
T |
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| Q |
101 |
caccaaaagctctccattcggaaaaccattatacaattctccccaatcaataatagaccttgcatactcatcacccattctttttgtaccctcccacacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32812736 |
caccaaaagctctccattcggaaaaccattatacaattctccccaatcaataatagaccttgcatactcatcacccattctttttgtaccctcccacacc |
32812637 |
T |
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| Q |
201 |
atctccaccaaccttgagaattcaccttccttcaattcctcacactttgccgaagcgtacgccgttaa |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32812636 |
atctccaccaaccttgagaattcaccttccttcaattcctcacactttgccgaagcttacgccgttaa |
32812569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 32830366 - 32830098
Alignment:
| Q |
1 |
atagtataatatccttcttatgataaactactggacaacaatacttaggcttcccccatggatactccacctcttcaaaccctaacctccaccatgaaga |
100 |
Q |
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||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32830366 |
atagtataatatccttcctatgataaaccacaggacaacaatacttaggcttcccccatggatactccacctcttcaaaccctagcctccaccatgaaga |
32830267 |
T |
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| Q |
101 |
caccaaaagctctccattcggaaaaccattatacaattctccccaatcaataatagaccttgcatactcatcacccattctttttgtaccctcccacacc |
200 |
Q |
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|||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||||| ||| |||||| |||| |
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| T |
32830266 |
caccaaaacatccccatttggaaaaccattatacaactctccccaatcaataatagatcttgcatattcatcactcattcttcttgaaccctcttccacc |
32830167 |
T |
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| Q |
201 |
atctccaccaaccttgagaattcaccttccttcaattcctcacactttgccgaagcgtacgccgttaat |
269 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32830166 |
atctccaccaaccttgaaaattcaccttccttcaattcctcacactttgccgaagcgtacgctgttaat |
32830098 |
T |
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