View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17682_high_26 (Length: 211)

Name: NF17682_high_26
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17682_high_26
NF17682_high_26
[»] chr7 (3 HSPs)
chr7 (154-195)||(5617903-5617944)
chr7 (91-144)||(33807560-33807616)
chr7 (166-195)||(21311763-21311792)
[»] chr8 (2 HSPs)
chr8 (159-195)||(34676988-34677024)
chr8 (159-195)||(28798979-28799015)
[»] chr3 (3 HSPs)
chr3 (163-195)||(26452855-26452887)
chr3 (1-68)||(26452720-26452787)
chr3 (94-142)||(29722745-29722793)
[»] chr4 (3 HSPs)
chr4 (86-124)||(2605472-2605510)
chr4 (94-156)||(53860796-53860860)
chr4 (94-157)||(21538922-21538988)
[»] chr2 (1 HSPs)
chr2 (94-124)||(19987135-19987165)
[»] chr5 (1 HSPs)
chr5 (162-195)||(14123050-14123083)
[»] chr1 (1 HSPs)
chr1 (94-149)||(17322101-17322157)


Alignment Details
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 5617944 - 5617903
Alignment:
Q  154 taatgaccgccgattttctagttataagccagcggtagttaa 195  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  5617944 taattaccgccggttttctagttataagccagcggtagttaa 5617903  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 33807560 - 33807616
Alignment:
Q  91 ttatttcctagaaacatatggaaatgatcaa---aaatccaatgatagttaactacc 144  Q
    |||||||||||||||||||| ||||||| ||   ||||||| |||||||||||||||    
T  33807560 ttatttcctagaaacatatgcaaatgataaaaataaatccagtgatagttaactacc 33807616  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 21311792 - 21311763
Alignment:
Q  166 attttctagttataagccagcggtagttaa 195  Q
    ||||||||||||||||||||||||||||||    
T  21311792 attttctagttataagccagcggtagttaa 21311763  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 34677024 - 34676988
Alignment:
Q  159 accgccgattttctagttataagccagcggtagttaa 195  Q
    |||||||||||||||||||||||||| ||||||||||    
T  34677024 accgccgattttctagttataagccaacggtagttaa 34676988  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 28798979 - 28799015
Alignment:
Q  159 accgccgattttctagttataagccagcggtagttaa 195  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  28798979 accgccggttttctagttataagtcagcggtagttaa 28799015  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 26452887 - 26452855
Alignment:
Q  163 ccgattttctagttataagccagcggtagttaa 195  Q
    |||||||||||||||||||||||||||||||||    
T  26452887 ccgattttctagttataagccagcggtagttaa 26452855  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 26452720 - 26452787
Alignment:
Q  1 aaaagataatgaaagtatgagagaaaaagttgtnnnnnnngttgttagaaaatggttgtatatatatc 68  Q
    |||| ||||||  ||||||||||| ||||||||       ||||||||||||||||||||||||||||    
T  26452720 aaaatataatgtgagtatgagagagaaagttgtaacaaaagttgttagaaaatggttgtatatatatc 26452787  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 29722745 - 29722793
Alignment:
Q  94 tttcctagaaacatatggaaatgatcaaaaatccaatgatagttaacta 142  Q
    ||||||||||||| ||||||||||| ||||||| || | ||||||||||    
T  29722745 tttcctagaaacacatggaaatgataaaaaatctaacggtagttaacta 29722793  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 2605510 - 2605472
Alignment:
Q  86 atccgttatttcctagaaacatatggaaatgatcaaaaa 124  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  2605510 atccattatttcctagaaacacatggaaatgatcaaaaa 2605472  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 53860796 - 53860860
Alignment:
Q  94 tttcctagaaacatatggaaatgatc--aaaaatccaatgatagttaactaccgctggcttataa 156  Q
    ||||||||||||| |||||||||| |  |||||||||| | |||||||| ||||||| |||||||    
T  53860796 tttcctagaaacacatggaaatgaccaaaaaaatccaacggtagttaaccaccgctgacttataa 53860860  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 21538988 - 21538922
Alignment:
Q  94 tttcctagaaacatatggaaatgatcaaaaat---ccaatgatagttaactaccgctggcttataat 157  Q
    ||||||||||||| | |||||||| ||||||    |||||| ||||||| |||||||||||||||||    
T  21538988 tttcctagaaacacaaggaaatgaccaaaaacaccccaatggtagttaattaccgctggcttataat 21538922  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 124
Target Start/End: Complemental strand, 19987165 - 19987135
Alignment:
Q  94 tttcctagaaacatatggaaatgatcaaaaa 124  Q
    |||||||||||||||||||||||||||||||    
T  19987165 tttcctagaaacatatggaaatgatcaaaaa 19987135  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 14123083 - 14123050
Alignment:
Q  162 gccgattttctagttataagccagcggtagttaa 195  Q
    |||| |||||||||||||||||||||||||||||    
T  14123083 gccggttttctagttataagccagcggtagttaa 14123050  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 17322101 - 17322157
Alignment:
Q  94 tttcctagaaacatatggaaatgatcaaaaatc-caatgatagttaactaccgctgg 149  Q
    |||| |||||||| ||||||||||||||||| | || || |||||||||||||||||    
T  17322101 tttcttagaaacaaatggaaatgatcaaaaaactcagtggtagttaactaccgctgg 17322157  T

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