View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_high_27 (Length: 210)
Name: NF17682_high_27
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 37627571 - 37627744
Alignment:
| Q |
27 |
tggacatgtttgacgcatatctggaagaagcgaaatggttcaatagcggatatgtgccaagttttaagacatatttggataatggaacaatttctgttgg |
126 |
Q |
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| T |
37627571 |
tggacatgtttgacgcatatctggaagaagcgaaatggttcaatagcggatatgtgccaagttttaagacgtatttggataatggggtgatttcggttgg |
37627670 |
T |
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| Q |
127 |
atcatgcatggcattggtgcattctactttcctcattggagatggtctgtcaaaggaaactatttccatgatga |
200 |
Q |
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| T |
37627671 |
atcatgcatggcattggtgcattctactttcctcattggtgatggtctctcaaaggaaactatttccatgatga |
37627744 |
T |
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Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 37619164 - 37619337
Alignment:
| Q |
29 |
gacatgtttgacgcatatctggaagaagcgaaatggttcaatagcggatatgtgccaagttttaagacatatttggataatggaacaatttctgttggat |
128 |
Q |
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| T |
37619164 |
gacatatttgaagcatttcttgaagaagccaaatggttcaataatggatgtgtgccaaattttaagacatatttggataatggagtaatttctgctggat |
37619263 |
T |
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| Q |
129 |
catgcatggcattggtgcattctactttcctcattggagatggtctgtcaaaggaaactatttccatgatgatg |
202 |
Q |
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| T |
37619264 |
catgcatggccttggtgcatgctactttcctcattggtgatggtctctcaaaggaaactatgtccataatgatg |
37619337 |
T |
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