View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_high_28 (Length: 208)
Name: NF17682_high_28
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 25417462 - 25417600
Alignment:
| Q |
18 |
atagagtcgttaaaagattttacattatgttgtcagggccggtcctaagctagtgtaacctcaattaacattgtataacttctaacaattgatgacacct |
117 |
Q |
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| T |
25417462 |
atagagtcgttaaaagattttacattatgttgttagggccggtcctaagctagtgtaacctcaattaacattgtataacttccaacaattgatgacacct |
25417561 |
T |
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| Q |
118 |
cacctctacttattcaccaaatgaaatataatatctatt |
156 |
Q |
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| T |
25417562 |
cacctctacttattcaccaaatgaagtataatatctatt |
25417600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 187
Target Start/End: Original strand, 25417622 - 25417653
Alignment:
| Q |
156 |
tattatcatcatttattataaaatggagaata |
187 |
Q |
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| T |
25417622 |
tattatcatcatttattataaaatggagaata |
25417653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 1006665 - 1006750
Alignment:
| Q |
22 |
agtcgttaaaagattttacattatgttgtcagggccggtcctaagctagtgtaacctcaattaacattgtataacttctaacaatt |
107 |
Q |
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| T |
1006665 |
agtcgttgaatgattttacattatgttgtcagggccggtccaaaactaatgtaacctcaattaacattgcataacttccaacaatt |
1006750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 1006771 - 1006816
Alignment:
| Q |
94 |
aacttctaacaattgatgacacctcacctctacttattcaccaaat |
139 |
Q |
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| T |
1006771 |
aacttccaacaattgatgacacatcacctctacttattcaccaaat |
1006816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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