View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_high_3 (Length: 494)
Name: NF17682_high_3
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_high_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 113 - 494
Target Start/End: Original strand, 4457606 - 4457987
Alignment:
| Q |
113 |
aagtatattcttgatacacagtttcagattaaggatcttgatcccatatgtttctttcttggtcttcaggtggcaagatccaaaggtgggacaactttga |
212 |
Q |
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| T |
4457606 |
aagtatattcttgatacacagtttcagattaaggatcttggtcccatatgtttctttcttggtcttgaggtggcaagatctaaaggtgggacagctttga |
4457705 |
T |
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| Q |
213 |
atcaaagaaaatacacattagaatttctttatgatagtggaattctttatgaaaaacctgttactaccccatgtaatccttccatcatattaagcagtga |
312 |
Q |
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| T |
4457706 |
atcaaagaaaatacacattagaacttctttatgatagtggaattctttatgaaaaacctgttactaccccatgtaatccttccatcaaattaagcagtga |
4457805 |
T |
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| Q |
313 |
aggtagcccatcttaccctaatcattcttcttatagaaggcttattggtaggttatcatacctaaccactacaacgacaaacattgcattccctttacaa |
412 |
Q |
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| T |
4457806 |
aggtagcccatcttaccctaatcattcttcttatagaaggcttattggtaggttatcatacctaaccactacaacgacaaacattgcattccctttacaa |
4457905 |
T |
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| Q |
413 |
caacttagtcaatttgttcataagcctcttgaaacttatttccaagctgccatcagagtattaaagtatctcaaatctgccc |
494 |
Q |
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| T |
4457906 |
caacttagtcaatttgttcataagcctcttgaaacttatttccaagctgccatcagagtattaaagtatctcaaatctgccc |
4457987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 4403578 - 4403677
Alignment:
| Q |
19 |
cgtaaaagcctcaacatcgtgttttgtggctttactagtctatgttgatgacatagtcttagctggaaattccatgatagaaattaagcatatcaagtat |
118 |
Q |
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| T |
4403578 |
cgtaaaagcctcaacatcgtcttttgtggctttactagtctatgttgatgacatagtcttagctggaaatttcatgacagaaattaatcatatcaagtat |
4403677 |
T |
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