View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_high_7 (Length: 416)
Name: NF17682_high_7
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_high_7 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 37845140 - 37844758
Alignment:
| Q |
18 |
catataaagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatcc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37845140 |
catataaagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatcc |
37845041 |
T |
|
| Q |
118 |
agtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37845040 |
agtagtgtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaa |
37844941 |
T |
|
| Q |
218 |
ttcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844940 |
ttcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctct |
37844841 |
T |
|
| Q |
318 |
gtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatacaaggattg |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844840 |
gtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatacaaggattg |
37844758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 28 - 324
Target Start/End: Complemental strand, 37832147 - 37831851
Alignment:
| Q |
28 |
gtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgc |
127 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||| |
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| T |
37832147 |
gtggtgggggtttcttttcatgcaaaatatcatgaaggcttccattttccatgaattcatataagactaaaccatattcctctccaatccagtagtctgc |
37832048 |
T |
|
| Q |
128 |
gtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaacttc |
227 |
Q |
| |
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|| ||| ||||||||| ||||||||||||| |||||||||||||||| ||| |||| |||||| || |||| ||||||| |||||||| | |||| |
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| T |
37832047 |
gtgtttgatcaaatttcgatgcttaaacatcccaaggacttcaatttcgttgcgtatgatacttagccgctttttcttgttccacccaaattcgaccttc |
37831948 |
T |
|
| Q |
228 |
tttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctgtagcct |
324 |
Q |
| |
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|||| ||||||| | || ||||||| ||| ||||||||||| ||| |||| ||||| ||||||| ||||| | |||||||||||| ||||||| |
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|
| T |
37831947 |
tttacagcaaaaacatgctgaccaattatggctttgtacacagtaccatgtcctcccttgccaatgatataacattgatttaggttctcagtagcct |
37831851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 344
Target Start/End: Complemental strand, 37843269 - 37842947
Alignment:
| Q |
22 |
taaagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagta |
121 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| ||| |||||||||||| |
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|
| T |
37843269 |
taaagagtggtggaggtttcttctcatgcaaaatatcatgaaggcttccatttttcatgaattcatacaagactaaaccatagtcctttccaatccagta |
37843170 |
T |
|
| Q |
122 |
gtgtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattca |
221 |
Q |
| |
|
|| |||||||| |||| ||| |||||||| ||||| |||| ||||||||||||||| |||| | || ||| || || |||| ||| |||||| |
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| T |
37843169 |
gtcagcgtatttgatcacgtttcgatgcttatacattccaagcacttcaatttcattgcacatcatacgtagccgctttaccctgttgcttgtgaattca |
37843070 |
T |
|
| Q |
222 |
aacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctgtag |
321 |
Q |
| |
|
|||||||||| |||| || | ||||||||||| | | ||||||||||| ||| ||||||||| || ||||||||||| |||||| ||||||||||||||| |
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| T |
37843069 |
aacttctttacagcataaacctgttgaccaagcaaagctttgtacacaataccatgtgctcctcttccaataatatattgatcacttaggttctctgtag |
37842970 |
T |
|
| Q |
322 |
cctccaaaactaggtcctgaagg |
344 |
Q |
| |
|
||| ||| ||||| | ||||||| |
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|
| T |
37842969 |
cctgcaacactagtttctgaagg |
37842947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 27 - 328
Target Start/End: Complemental strand, 37850979 - 37850678
Alignment:
| Q |
27 |
ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtg |
126 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||| |
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| T |
37850979 |
ggtggtggaggtttcttttcatgcaagatatcatgaaggcttccattttccatgaattcatataagattaaaccatagtcatttccaatccagtagtcca |
37850880 |
T |
|
| Q |
127 |
cgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaactt |
226 |
Q |
| |
|
|||| || |||||| ||||||||||||| | |||||||||| ||| ||| | ||| |||||| || ||| ||||||| || ||||||| ||| |
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|
| T |
37850879 |
aacatttgattaaatttcgatgcttaaacatccctaggacttcaacttcgttgcgcgtgatacttagccgcttttgcttgttccgtctgaattcaacctt |
37850780 |
T |
|
| Q |
227 |
ctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctgtagcctcc |
326 |
Q |
| |
|
||||| |||| || | || || || |||| ||||||||||| ||| ||||||||| | ||||||||||| |||||||||||||||| ||||||||| |
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| T |
37850779 |
ctttacagcacaaacagtttcacaaattatagctttgtacacaataccatgtgctcctccaccaataatataccgatcatttaggttctcagtagcctcc |
37850680 |
T |
|
| Q |
327 |
aa |
328 |
Q |
| |
|
|| |
|
|
| T |
37850679 |
aa |
37850678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 334
Target Start/End: Complemental strand, 37837642 - 37837332
Alignment:
| Q |
24 |
aagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagt |
123 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||| ||||||||||||||| ||||||||||||| || ||||||||| || ||||||||||| | |
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|
| T |
37837642 |
aagggtggtgggggtttcatttcatgcaaaatttcataaaggcttccattttcaatgaatttatatatgattaaaccatagtcatttccaatccagtggc |
37837543 |
T |
|
| Q |
124 |
gtgcgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaa |
223 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||||||||||| ||| ||||| |||| | | ||| ||||| |||||||||||| |
|
|
| T |
37837542 |
tccaacatttgatcaaattttgatgcctaaggcccctaaggacttcaatttcgttgtccatgatacttcgccacttttgcctgttcaatccaaattcaaa |
37837443 |
T |
|
| Q |
224 |
cttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctgtagcc |
323 |
Q |
| |
|
|||||||| |||| |||| || | | || ||| ||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||||||||||||| |
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|
| T |
37837442 |
cttctttacagcacaagcctgctcattaattatggctttgtacacaataccatgtgctcctcttccaataatatactgatcatttaggttctctgtagcc |
37837343 |
T |
|
| Q |
324 |
tccaaaactag |
334 |
Q |
| |
|
||||||||||| |
|
|
| T |
37837342 |
tccaaaactag |
37837332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 28089942 - 28089826
Alignment:
| Q |
212 |
tccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttagg |
311 |
Q |
| |
|
||||||||||| ||||||| |||| || | |||||||||| || ||||||||||| ||| ||||||||| ||||||| |||||| |||||||||| |
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|
| T |
28089942 |
tccaaattcaactttctttacagcacaaacctgttgaccaatcatggctttgtacacaataccatgtgctcctctgccaacaatataccaatcatttagg |
28089843 |
T |
|
| Q |
312 |
ttctctgtagcctccaa |
328 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
28089842 |
ttctctgtagcttccaa |
28089826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 8680131 - 8680207
Alignment:
| Q |
27 |
ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccata |
103 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
8680131 |
ggtggcgggggtttcttttcatgcaaaatatcatgaaggcttccattttccatgaattcatataagagtaaaccata |
8680207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 29250525 - 29250658
Alignment:
| Q |
51 |
aaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgcgtatttcatcaaattttgatgct |
150 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| | | |||||||||||||| ||| ||||||||| |||| ||| ||||| |||| ||| |||| |
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|
| T |
29250525 |
aaaatatcatgaaggcttccattttctatgaattcaaacaagactaaaccatattcctatccaatccattagtatgcttatttgatcatgtttaattgct |
29250624 |
T |
|
| Q |
151 |
taaacattgcaaggacttcaatttcattgaacat |
184 |
Q |
| |
|
|| ||||| |||| |||||||||| ||| |||| |
|
|
| T |
29250625 |
tacacattccaagtgcttcaatttctttgcacat |
29250658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 52264 - 52183
Alignment:
| Q |
39 |
ttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagt |
123 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||| | | | ||||||||||||||| |
|
|
| T |
52264 |
ttcttttcatgtaaaatatcatgaaggcttc---tttccatgaattaataaaagactaaaccacagttctctccaatccagtagt |
52183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 31634106 - 31634179
Alignment:
| Q |
39 |
ttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaat |
115 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||| ||||||| |
|
|
| T |
31634106 |
ttcttttcatgtaaaatatcatgaaggcttc---tttccatgaattaatacaagactaaaccacaatcctctccaat |
31634179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 36866323 - 36866265
Alignment:
| Q |
24 |
aagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaa |
82 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | |||||||||||| || ||||| |
|
|
| T |
36866323 |
aagggtggtgggggtttcttttcatgcaaaatattgtaaaggcttccattgtcaatgaa |
36866265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 36866080 - 36866040
Alignment:
| Q |
288 |
ccaataatatagtgatcatttaggttctctgtagcctccaa |
328 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
36866080 |
ccaataatatattgatcatttaggttctctgtagcttccaa |
36866040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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