View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_low_10 (Length: 361)
Name: NF17682_low_10
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 25358926 - 25359228
Alignment:
| Q |
22 |
atggtatgagggtggtaaactggttatgttggtatttcatagtatttaaggtaatgagttaagtgtttgtttatactttctagttgtggagttccaaact |
121 |
Q |
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| T |
25358926 |
atggtatgagggtggtaaactgattatgttggtatttcatagtatttaaggtaatgagttaagtgtt----tatactttctagttgtggagttccaaact |
25359021 |
T |
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| Q |
122 |
ttaaaatggaattgtctaacttctgagctaagtatatgtgtaagtctagaggttggtactttgaagcctaaaatcatcatgatgtcattaggatatgtga |
221 |
Q |
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| T |
25359022 |
ttaaaatggaattgtctaacttctgagctaagtatatgtgtaagtctagaggttggtactttgaagcctaaaatcattatgatgtca-taggatatgtga |
25359120 |
T |
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| Q |
222 |
cgtgtgatcaatgtattggagct-------------cgtacgtacctagtactatgtttgggtgataataaacctttgcattcaaaaagaaaacaaaagg |
308 |
Q |
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| T |
25359121 |
cgtgtgatcaatgtattggagctggattcttagatgggtacgtacctagtactatgtttgggtgataataaacctttgcattcaaaaagaaaacaaaagg |
25359220 |
T |
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| Q |
309 |
ctgtttga |
316 |
Q |
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|||||||| |
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| T |
25359221 |
ctgtttga |
25359228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 25354626 - 25354706
Alignment:
| Q |
241 |
agctcgtacgtacctagtactatgtttgggtgataataaa-----cctttgcattcaaaaagaaaacaaaaggctgtttga |
316 |
Q |
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| T |
25354626 |
agctcgtacgtacctagtactatgttggggtgataataaaataaacttttgcattcaaaaagaaaataaaaagttgtttga |
25354706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 25354434 - 25354570
Alignment:
| Q |
89 |
tgtttatactttctagttgtggagttccaaactttaaaatggaattgtctaacttctgagc-------taagtatat---gtgtaagtctagaggttggt |
178 |
Q |
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| T |
25354434 |
tgtttctactttctagttgtggagttccaaacttgaaagtg-aattgtctagcttctaaccccctgagtgagtatattatgtgtaagtcta-aggttggt |
25354531 |
T |
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| Q |
179 |
actttgaagcctaaaatcatcatgatgtcattaggatat |
217 |
Q |
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| T |
25354532 |
attttgtagcctaaaatcgtcatgatgtcatgaggatat |
25354570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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