View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_low_11 (Length: 361)
Name: NF17682_low_11
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 31040164 - 31040517
Alignment:
| Q |
1 |
aaattgaatatcaatttcagttactgcttaacttctttcccctgcatattttttgaacaaataataatcactaaacagaatataacagtagtgacagggg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31040164 |
aaattgaatatcaatttcagttacagcttaacttctttcccctgcatattttttgaacaaataataatcactaaacagaatataacagtagtgacggggg |
31040263 |
T |
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| Q |
101 |
gagaaaattaagcctctaaacgagcaagtattcattcctgtggctaaatgggaaattaaaataaaatataggttttatattgagcttaaatcattttaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040264 |
gagaaaattaagcctctaaacgagcaagtattcattcctgtggctaaattggaaattaaaataaaatataggttttatattgagcttaaatcattttaca |
31040363 |
T |
|
| Q |
201 |
aaccgactcacaaaaataaggtgatgattgttactgggcctgattctctaatattttgttgagtggcccatgtaatagcatattagttctttattttatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040364 |
aaccgactcacaaaaataaggtgatgattgttactgggcctgattctctaatattttgttgagtggcccatgtaatagcatattagttctttattttatt |
31040463 |
T |
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| Q |
301 |
ttaatattgaggctaactcatttttattaaaataaaattataaagtttcatttc |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040464 |
ttaatattgaggctaactcatttttattaaaataaaattataaagtttcatttc |
31040517 |
T |
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