View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_low_15 (Length: 312)
Name: NF17682_low_15
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 36993752 - 36993639
Alignment:
| Q |
19 |
taatggtcttatagttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacacctatgataaaatc |
118 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36993752 |
taatggtcttatggttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacacctatgataaaatc |
36993653 |
T |
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| Q |
119 |
aaaaaatcatattc |
132 |
Q |
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|||||||||||||| |
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| T |
36993652 |
aaaaaatcatattc |
36993639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 37019192 - 37019079
Alignment:
| Q |
19 |
taatggtcttatagttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacacctatgataaaatc |
118 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37019192 |
taatggtcttatggttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacacctatgataaaatc |
37019093 |
T |
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| Q |
119 |
aaaaaatcatattc |
132 |
Q |
| |
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|||||||||||||| |
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| T |
37019092 |
aaaaaatcatattc |
37019079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 36956157 - 36956040
Alignment:
| Q |
26 |
cttatagttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacacctatgataaaatcaaaaaat |
125 |
Q |
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||||| ||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||||||| || ||||||||| | |
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| T |
36956157 |
cttatggttttaggactctctgaagcacccagagaaattcctattataacagagtgaacaataatccccaactccaacacctataatgaaatcaaaaca- |
36956059 |
T |
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| Q |
126 |
catattctatcacaatcaat |
145 |
Q |
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|||||| |||||||||||| |
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| T |
36956058 |
-atattcaatcacaatcaat |
36956040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 36939586 - 36939484
Alignment:
| Q |
20 |
aatggtcttatagttttaggactctctgaagcacctaaagaaattcctatgataacagagtgaacaataattcccaactccaacacctatgataaaatca |
119 |
Q |
| |
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||||| |||||||| |||||||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||| |||||| || |||||| |
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| T |
36939586 |
aatggccttatagtcttaggactctctgaagcacccagagaaattcctattataacggagtgaacaataattcccaactccaatacctattatgaaatca |
36939487 |
T |
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| Q |
120 |
aaa |
122 |
Q |
| |
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||| |
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|
| T |
36939486 |
aaa |
36939484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 36993649 - 36993612
Alignment:
| Q |
258 |
aaatcatattcatatctcatgcacaaatatctttatat |
295 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
36993649 |
aaatcatattcacatctcatgcacaaatatctttatat |
36993612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 37019089 - 37019052
Alignment:
| Q |
258 |
aaatcatattcatatctcatgcacaaatatctttatat |
295 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| |
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|
| T |
37019089 |
aaatcatattcacatctcatgcacaaatatctttatat |
37019052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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