View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_low_2 (Length: 622)
Name: NF17682_low_2
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 7e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 423 - 605
Target Start/End: Original strand, 26679145 - 26679327
Alignment:
| Q |
423 |
aataatcaatctcaaaacaaatccactaaacagatacagtccattttaatggcaatgtgacaataatgtcaataagtttagagaagtagcactattacac |
522 |
Q |
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| T |
26679145 |
aataatcaatctcaaaacgaatccactaaacagatacagtccattttaatggcaatgtgacaataatgtcaataagtttagagaagtagcactattacac |
26679244 |
T |
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| Q |
523 |
acaatcttcaaatcagaatttaagataagaaatctaacttagggatcaagattccaatccatccaagcatccataccaatact |
605 |
Q |
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| T |
26679245 |
acaatctacaaatcagaatttaagataagaaatctaacttagggatcaagattccaatccatccaagcatccataccaatact |
26679327 |
T |
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Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 26678990 - 26679081
Alignment:
| Q |
268 |
tttatataaaagcatttgtaacaatgaataataaactttaattctttaatctaaattcaatttatatgaatattttgaattcaattgtatga |
359 |
Q |
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| T |
26678990 |
tttatgtaaaagtatttgtaacaatgaataataaactttgattctttaaacttgattcaatttatatgaatattttgaactcaattgtatga |
26679081 |
T |
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