View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17682_low_32 (Length: 205)
Name: NF17682_low_32
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_low_32 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 9818174 - 9818341
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9818174 |
aaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaa |
9818273 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagaccatagcccttaccttagatgctt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
9818274 |
attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgctt |
9818341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 42077468 - 42077612
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42077468 |
aaaattgcaactcaccaattcttataattaacaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcgtatcaa |
42077567 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagac |
161 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42077568 |
attcaacatcataatctatcattctcatttaaacatggtcaagac |
42077612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 21231845 - 21232012
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
||||||| |||| |||||||| ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21231845 |
aaaattggaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaa |
21231944 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagaccatagcccttaccttagatgctt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||| |||| |
|
|
| T |
21231945 |
attcaacatcataatctatcattttcatttaaacacggtcaagactagagccattaccttagacgctt |
21232012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 177
Target Start/End: Complemental strand, 9881215 - 9881085
Alignment:
| Q |
48 |
caactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatt-t |
146 |
Q |
| |
|
|||||||||||||| |||||||||| | |||||||||||||||||||||| |||| | |||||||||||||| || |||||||||||| ||||||||| |
|
|
| T |
9881215 |
caactacaagaaaattaataaaacatagtaaatcttttcactcatccattgaatcgataagcatatcaaatttaagatcataatctattattttcattca |
9881116 |
T |
|
| Q |
147 |
aaacatggtcaagaccatagcccttacctta |
177 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |
|
|
| T |
9881115 |
aaacatgatcaagactatagcccttacctta |
9881085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 24423320 - 24423220
Alignment:
| Q |
78 |
aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagaccatagcccttacctt |
176 |
Q |
| |
|
||||| |||||||||||| | ||| |||||||||| |||||||| ||||||| |||||||||||| ||||| |||||||||||| | | ||||||||| |
|
|
| T |
24423320 |
aatctcttcactcatccaatgaat-aagaagcatacaaaattcaatatcataaactatcattttcagttaaatcatggtcaagactagggtccttacctt |
24423222 |
T |
|
| Q |
177 |
ag |
178 |
Q |
| |
|
|| |
|
|
| T |
24423221 |
ag |
24423220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 29115604 - 29115666
Alignment:
| Q |
83 |
tttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatt |
145 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
29115604 |
tttcactcatccatcgaatcatgaagcatatcaaattcaatatcataacctactattttcatt |
29115666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 10530137 - 10530304
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10530137 |
aaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaa |
10530236 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagaccatagcccttaccttagatgctt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
10530237 |
attcaacatcataatctatcattttcatttaaacatggtcaagactagagcccttaccttagatgctt |
10530304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 9745282 - 9745118
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
9745282 |
aaaattgcaactcaccaattcatataattatcaactacaagaaaaataataaaacacaataaatattttcactcatccattgaatcaagaagcatatcaa |
9745183 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagaccatagcccttaccttagatg |
181 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
9745182 |
attcaacatcataatctatcattttcctttaaacatggtcaagactagagcccttaccttggatg |
9745118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 29587734 - 29587565
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatctttt-cactcatccattaaatcaagaagcatatca |
115 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29587734 |
aaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatctttttcactcatccattaaatcaagaagcatatca |
29587635 |
T |
|
| Q |
116 |
aattcaacatcataatctatcattttcatttaaa-catggtcaagaccatagcccttaccttagatgctt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||| | ||||||||||||||| |||| |
|
|
| T |
29587634 |
aattcaacatcataatctatcattttcattcaaatcatggtcaagactagagcccttaccttagacgctt |
29587565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 13168007 - 13167881
Alignment:
| Q |
52 |
tacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-c |
150 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
13168007 |
tacaagcaaaataataaaacacaataaatcttttccctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcacttaaatc |
13167908 |
T |
|
| Q |
151 |
atggtcaagaccatagcccttacctta |
177 |
Q |
| |
|
||||||||||| | ||||||||||||| |
|
|
| T |
13167907 |
atggtcaagactagagcccttacctta |
13167881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 8311891 - 8311731
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaa-gaaaaataataaaa-cacaataaatcttttcactcatccattaaatcaagaagcatatc |
114 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||||||| ||||| |||||||| || ||||||||||||||| ||||||| ||||||||||||| || |
|
|
| T |
8311891 |
aaaattgcaaatcaccaattcttataattatcaactacaaagaaaagtaataaaaacataataaatcttttcacccatccatcgaatcaagaagcatgtc |
8311792 |
T |
|
| Q |
115 |
aaattcaacatcataatctatcattttcatttaaa-catggtcaagaccatagcccttacc |
174 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| |||||||||||| | ||| |||||| |
|
|
| T |
8311791 |
aaattcaacatcataatctattattttcagttaaatcatggtcaagactagagcacttacc |
8311731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 46002795 - 46002885
Alignment:
| Q |
72 |
acaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagac |
161 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| || |||| ||||||||||||| |||| ||||||| |
|
|
| T |
46002795 |
acaattaatcttttcactcatccattgaatcaagaagcatatcaaattcaatatcacaacctattattttcatttaaatcatgatcaagac |
46002885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 31211188 - 31211093
Alignment:
| Q |
78 |
aatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcattta-aacatggtcaagaccatagccctta |
172 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||||||||| || ||||||| |||| |||||||| || | |||| ||||||| | |||||||| |
|
|
| T |
31211188 |
aatctcttcacgcatctattaaatcaagaagcatatcaaatttaatatcataacctattattttcatctagatcatgatcaagactagagccctta |
31211093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 41943014 - 41943180
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41943014 |
aaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
41943113 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagaccatagcccttaccttagatgct |
183 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| | |||| || ||||||||||| |
|
|
| T |
41943114 |
attcaacaacataatctatcattttcatttaaacatggtcaagactagagcctttgccttagatgct |
41943180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 10336080 - 10336177
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatc |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10336080 |
aaaattgcaactcaccaattcttataatttgcaactacaagaaaaataataaaacacactaaatcttttcactcatccattaaatcaagaagcatatc |
10336177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 3295409 - 3295290
Alignment:
| Q |
61 |
aataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaag |
159 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
3295409 |
aataataaaacacaataaatcttttctctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcagtttcacttaaatcatggtcaag |
3295310 |
T |
|
| Q |
160 |
accatagcccttaccttaga |
179 |
Q |
| |
|
|| | ||| ||||||||||| |
|
|
| T |
3295309 |
actagagctcttaccttaga |
3295290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 31519152 - 31519254
Alignment:
| Q |
75 |
ataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagaccatagcccttac |
173 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||| | |||| |||| |
|
|
| T |
31519152 |
ataaatcttttcactcatctattgagtcaagaagcatatcaaattcaacgtcataacctatcattttcaattaaatcatggtcaagactagagcctttac |
31519251 |
T |
|
| Q |
174 |
ctt |
176 |
Q |
| |
|
||| |
|
|
| T |
31519252 |
ctt |
31519254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 10344738 - 10344810
Alignment:
| Q |
114 |
caaattcaacatcataatctatcattttcatttaaacatggtcaagaccatagcccttaccttagatgcttag |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||| |
|
|
| T |
10344738 |
caaattcaacatcataatctatcattttcatttaaaaatggtcaagactagaacccttaccttagatgcttag |
10344810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 31654571 - 31654726
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31654571 |
aaaattgcaactcaccaattcttataattagcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
31654670 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagaccatagccctta |
172 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
31654671 |
atccaacatcataatctatcattttcatttaaacatggtcaagactagagccctta |
31654726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 51443522 - 51443650
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51443522 |
aaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaa |
51443621 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatt |
145 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51443622 |
attcaacatcataatctatcattttcatt |
51443650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 13380218 - 13380378
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||||| |||||||||| |||||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
13380218 |
aaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatcca-tgaatcaagaagtatatcaa |
13380316 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaa-catggtcaagaccatagcccttacctta |
177 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||| |||||||||||| | | ||||||||||| |
|
|
| T |
13380317 |
attcaacgtcataacctatcattttcacttaaatcatggtcaagactagaacccttacctta |
13380378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 8311186 - 8311247
Alignment:
| Q |
20 |
attgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatc |
81 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| |||| ||||| |||||||| |
|
|
| T |
8311186 |
attgcaacccaccaattcttataattattaactacaagaaaattaatcaaacataataaatc |
8311247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 108014 - 107870
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
108014 |
aaaattgcaactcaccaattcttataattagcaactacaacaaaaataataaaatacaataaatcttttcactcatccattaaatcaaggagcatatcaa |
107915 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagac |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107914 |
attcaacatcataatctatcattttcatttaaacatggtcaagac |
107870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 27977147 - 27977314
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| || ||||| ||||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27977147 |
aaaattgcaactcacaaattcatataattatcaactacaagaaaattaatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaa |
27977246 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagaccatagcccttaccttagatgctt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||| |
|
|
| T |
27977247 |
attcaacatcataatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctt |
27977314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 28063675 - 28063842
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| || ||||| ||||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28063675 |
aaaattgcaactcacaaattcatataattatcaactacaagaaaattaatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaa |
28063774 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagaccatagcccttaccttagatgctt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||| |
|
|
| T |
28063775 |
attcaacatcataatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctt |
28063842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 29046559 - 29046701
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
29046559 |
aaaattgcaactcaccaattctta--attagcaactacaagaaaaataataaaatacaataaatattttcaatcatccattaaatcaaggagcatatcaa |
29046656 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagac |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29046657 |
attcaacatcataatctatcattttcatttaaacatggtctagac |
29046701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 16131078 - 16131237
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||| |||| |||||||| | | |||||||||||||||||| | | ||||||||||||| || | |
|
|
| T |
16131078 |
aaaattgcaactcaccaattcatataattatcaactacaaaaaaattaataaaatatagtaaatcttttcactcatcta-tgaatcaagaagcatgtcga |
16131176 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaa-catggtcaagaccatagcccttacctt |
176 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||| |||||||||||| | |||||||||||| |
|
|
| T |
16131177 |
attcagcatcataacctatcattttcaattaaaccatggtcaagactagagcccttacctt |
16131237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 28497230 - 28497349
Alignment:
| Q |
58 |
aaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtc |
156 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| ||| || ||||||||||| || ||||||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
28497230 |
aaaattaataaaacataataaatcttttcactcattcatgaa-tcaagaagcatgtcgaattcaacatcataacctatcattttcaattaaatcatggtc |
28497328 |
T |
|
| Q |
157 |
aagaccatagcccttacctta |
177 |
Q |
| |
|
||||| | ||||||||||||| |
|
|
| T |
28497329 |
aagactagagcccttacctta |
28497349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 22403915 - 22403747
Alignment:
| Q |
20 |
attgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatca------------agaa |
107 |
Q |
| |
|
|||||||| |||||||||||||||| |||| |||||||| |||||||||| ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
22403915 |
attgcaacccaccaattcttataattattaacttcaagaaaattaataaaacataataaatcttttcactcatccatcgaatcatccatcgaatcaagaa |
22403816 |
T |
|
| Q |
108 |
gcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagaccatagcccttacct |
175 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||| | ||||||||||| |
|
|
| T |
22403815 |
gcatatcaaattcaacatcataatctattattttcagttaaatcatggtaaagactagagcccttacct |
22403747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 15990169 - 15990336
Alignment:
| Q |
20 |
attgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaatt |
119 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15990169 |
attgcaacccaccaattcttataattatcaactacaagaaaattaataaaacataataattcttttcactcatccattaaatcaagaagcatatcaaatt |
15990268 |
T |
|
| Q |
120 |
caacatcataatctatcattttcatttaaa-catggtcaagaccatagcccttaccttagatgcttag |
186 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
15990269 |
caacgtcataatctatcattttcagttaaatcatggtcaagactagagcccttaccttagatacttag |
15990336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 40888687 - 40888848
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||||| |||||||| | |||||||||||||||||||||| | ||||||||||||||| || |
|
|
| T |
40888687 |
aaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaatataataaatcttttcactcatcca-tgaatcaagaagcatattaa |
40888785 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaa-catggtcaagaccatagcccttaccttag |
178 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| ||||| |||||| | ||||||||||||| |
|
|
| T |
40888786 |
attcaacgtcataatctatcattttcaattaaatcatggccaagactagggcccttaccttag |
40888848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 29453806 - 29453643
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataat-aaaacacaataaatcttttcactcatccattaaatcaagaagcatatca |
115 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||||| |||| |||||| |||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
29453806 |
aaaattgcaactcaccaattcatataattatcaactacaagaaaattaataaaaacataataaatcttttcactcatcca-tgaatcaagaagcatatca |
29453708 |
T |
|
| Q |
116 |
aattcaacatcata----atctatcattttcatttaaacatggtcaagaccatagcccttacctt |
176 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| || | || ||||||||| |
|
|
| T |
29453707 |
aattcaatgtcataatctatctatcattttcatttaaacatggtcaaaactagagtccttacctt |
29453643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 52641386 - 52641489
Alignment:
| Q |
75 |
ataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagaccatagcccttac |
173 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || | ||||||||| |
|
|
| T |
52641386 |
ataaatcttttcactcatccattgagtcaagaagcatatcaaattcaacatcataatctatcattttcaattaaatcatggtcaaaactagagcccttac |
52641485 |
T |
|
| Q |
174 |
ctta |
177 |
Q |
| |
|
|||| |
|
|
| T |
52641486 |
ctta |
52641489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 11650592 - 11650690
Alignment:
| Q |
87 |
actcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagaccatagcccttaccttagatgctt |
184 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| |||| || | || |||||| |||||| |||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
11650592 |
actcatcaattgaatcaagaagcatatcaaattcaatatcacaaccaattattttcttttaaatcatggttaagactatagcccttaccttatatgctt |
11650690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 19544714 - 19544786
Alignment:
| Q |
74 |
aataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcattta |
147 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
19544714 |
aataaatcttttcactcatccatcgaatcaataagcatatc-aattcaacatcataacctatcactttcattta |
19544786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 2181 - 2023
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaa |
116 |
Q |
| |
|
|||||||||| | |||||||| ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2181 |
aaaattgcaagtcaccaattcatataattatcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaa |
2082 |
T |
|
| Q |
117 |
attcaacatcataatctatcattttcatttaaacatggtcaagaccatagcccttacct |
175 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
2081 |
attcaacatcataatctattgttttcatttaaatatggtcaagactagagcccttacct |
2023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 2544 - 2667
Alignment:
| Q |
62 |
ataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaaga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||| | |
|
|
| T |
2544 |
ataataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaa |
2643 |
T |
|
| Q |
161 |
ccatagcccttaccttagatgctt |
184 |
Q |
| |
|
| | |||||||||||||||||||| |
|
|
| T |
2644 |
ctagagcccttaccttagatgctt |
2667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 148393 - 148443
Alignment:
| Q |
17 |
aaaattgcaacttaccaattcttataatttgcaactacaagaaaaataata |
67 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
148393 |
aaaattgcaactcaccaattcttataattagcaactacaagaaaaataata |
148443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 18927154 - 18927255
Alignment:
| Q |
74 |
aataaatcttttcactcatccattaaatc-aagaagcatatcaaattcaacatcataatctatcattttcatttaaa-catggtcaagaccatagccctt |
171 |
Q |
| |
|
||||||||| | ||| ||||| || |||| ||||||||||||||||||||| |||||| |||| |||||||| |||| ||||||||||| | ||||||| |
|
|
| T |
18927154 |
aataaatctctccacccatccgttgaatccaagaagcatatcaaattcaacttcataacctattattttcatctaaataatggtcaagacaagagccctt |
18927253 |
T |
|
| Q |
172 |
ac |
173 |
Q |
| |
|
|| |
|
|
| T |
18927254 |
ac |
18927255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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