View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17682_low_4 (Length: 485)

Name: NF17682_low_4
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17682_low_4
NF17682_low_4
[»] chr6 (3 HSPs)
chr6 (1-371)||(28841839-28842207)
chr6 (235-287)||(24558390-24558442)
chr6 (426-466)||(28841803-28841843)
[»] chr7 (4 HSPs)
chr7 (261-466)||(9385010-9385215)
chr7 (327-466)||(3378854-3378993)
chr7 (391-441)||(10003199-10003249)
chr7 (1-59)||(11091081-11091139)
[»] chr4 (9 HSPs)
chr4 (299-465)||(16648428-16648590)
chr4 (263-465)||(20771890-20772092)
chr4 (1-36)||(17338313-17338348)
chr4 (390-460)||(9852966-9853036)
chr4 (1-47)||(12249634-12249680)
chr4 (1-59)||(18321768-18321826)
chr4 (1-59)||(18453120-18453178)
chr4 (1-37)||(15888930-15888966)
chr4 (1-37)||(35189740-35189776)
[»] chr1 (3 HSPs)
chr1 (391-462)||(36576048-36576119)
chr1 (1-44)||(23034859-23034902)
chr1 (7-59)||(31343559-31343611)
[»] scaffold0430 (1 HSPs)
scaffold0430 (381-441)||(8441-8501)
[»] scaffold0815 (1 HSPs)
scaffold0815 (371-466)||(1193-1288)
[»] scaffold0688 (1 HSPs)
scaffold0688 (272-438)||(6291-6460)
[»] chr5 (3 HSPs)
chr5 (5-43)||(25581735-25581773)
chr5 (5-46)||(32948472-32948513)
chr5 (4-48)||(13938630-13938674)
[»] chr3 (2 HSPs)
chr3 (380-466)||(32657354-32657440)
chr3 (1-37)||(27868677-27868713)
[»] chr8 (2 HSPs)
chr8 (402-460)||(24698066-24698124)
chr8 (1-37)||(9798928-9798964)
[»] chr2 (3 HSPs)
chr2 (404-465)||(32129229-32129290)
chr2 (1-37)||(18985631-18985667)
chr2 (1-37)||(22497602-22497638)
[»] scaffold0290 (1 HSPs)
scaffold0290 (1-37)||(12251-12287)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 28842207 - 28841839
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacacttaaactcaatgcagaacagaattttggaaatttgagacaacaagaaaagggcaaagaaaaac 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  28842207 aagctaacatccatatatacaactttcaggaagacacctaaactcaatgcagaacaaaattttgaaaatttgagacaacaagaaaagggcaaagaaaaac 28842108  T
Q  101 gcacagcacatatgttttggacgcacgattgtgtgnnnnnnnn-gcacatgataacaaaaatgcannnnnnncaacctattttaaaagcggttttctcca 199  Q
    |||| | |||||||||||| || ||||||||||||         ||||| |||||||||||||||       |||||||||||||||| |||||||||||    
T  28842107 gcacggtacatatgttttgaacacacgattgtgtgtttttttttgcacaagataacaaaaatgcatttttt-caacctattttaaaagtggttttctcca 28842009  T
Q  200 tttaagcttctttaagactcttaaatcaacttcaacacatccaaatcattacccatggtcaaaacactttaaataagcacttacaacatgtcaaaacacc 299  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28842008 tttaagcttctttaagact--taaatcaactccaacacatccaaatcattacccatggtcaaaacactttaaataagcacttacaacatgtcaaaacacc 28841911  T
Q  300 aatcatatatcaaatttcatgaatttcactcattttaacataaaacttaaaataacaacattaacacaatca 371  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28841910 aatcatgtatcaaatttcatgaatttcactcattttaacataaaacttaaaataacaacattaacacaatca 28841839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 24558390 - 24558442
Alignment:
Q  235 cacatccaaatcattacccatggtcaaaacactttaaataagcacttacaaca 287  Q
    |||| ||||| ||| |||||||  |||||||||||||||||||||||||||||    
T  24558390 cacacccaaaacatcacccatgaacaaaacactttaaataagcacttacaaca 24558442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 466
Target Start/End: Complemental strand, 28841843 - 28841803
Alignment:
Q  426 aatcacaacaacatactagagcacaaattcaacatcaattc 466  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  28841843 aatcacaacaacatactaaagcacgaattcaacatcaattc 28841803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 261 - 466
Target Start/End: Complemental strand, 9385215 - 9385010
Alignment:
Q  261 aaacactttaaataagcacttacaacatgtcaaaacaccaatcatatatcaaatttcatgaatttcactcattttaacataaaacttaaaataacaacat 360  Q
    |||||||||||||||||| |||||||   ||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||  |||||||    
T  9385215 aaacactttaaataagcaattacaacccatcaaaacacaaatcatgcatcaaatttcatgaatttcactcattttaacataaaactcaaaaccacaacat 9385116  T
Q  361 taacacaatcaaatcatagatttagcatatcaacatcatggattcacaaataatcacatactcataatcacaacaacatactagagcacaaattcaacat 460  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  9385115 taacacaataaaatcatggatttagcatatcaacatcatggattcacaaataatcacatactcataatcacaacaacatactagagtacgaattccacat 9385016  T
Q  461 caattc 466  Q
    ||||||    
T  9385015 caattc 9385010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 327 - 466
Target Start/End: Original strand, 3378854 - 3378993
Alignment:
Q  327 actcattttaacataaaacttaaaataacaacattaacacaatcaaatcatagatttagcatatcaacatcatggattcacaaataatcacatactcata 426  Q
    |||||||| ||||||||||| ||||  ||||| | |||||||| |||||||  | ||| |||||||| | |||||||| ||||||||| |||||| || |    
T  3378854 actcatttaaacataaaactcaaaaatacaacttcaacacaattaaatcatgaacttaacatatcaataccatggatttacaaataataacatacacaaa 3378953  T
Q  427 atcacaacaacatactagagcacaaattcaacatcaattc 466  Q
     ||||||  ||| |||||| ||| |||||| |||||||||    
T  3378954 ttcacaatgacaaactagaccacgaattcatcatcaattc 3378993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 10003199 - 10003249
Alignment:
Q  391 caacatcatggattcacaaataatcacatactcataatcacaacaacatac 441  Q
    ||||||||| |||||| ||||||||| ||||||||||||| ||||||||||    
T  10003199 caacatcattgattcataaataatcatatactcataatcataacaacatac 10003249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11091081 - 11091139
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacacttaaactcaatgcagaacagaa 59  Q
    ||||||||| |||||| |||||||||||||||||| |  ||||| ||| ||||||||||    
T  11091081 aagctaacaaccatatctacaactttcatgaagactcccaaacttaattcagaacagaa 11091139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 299 - 465
Target Start/End: Original strand, 16648428 - 16648590
Alignment:
Q  299 caatcatatatcaaatttcatgaatttcactcattttaacataaaacttaaaataacaacattaacacaatcaaatcatagatttagcatatcaacatca 398  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||| ||||  |||| ||||||||||| || || | ||||||||||||| ||||||    
T  16648428 caatcatacattaaatttcatgaattttactcattttaacataaaactcaaaaacacaatattaacacaattaagtcgtggatttagcatatccacatca 16648527  T
Q  399 tggattcacaaataatcacatactcataatcacaacaacatactagagcacaaattcaacatcaatt 465  Q
    ||||||| |||||||||||||||  | |||||||||||||||||     ||||||||||||||||||    
T  16648528 tggattctcaaataatcacatacctaaaatcacaacaacatact----tacaaattcaacatcaatt 16648590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 263 - 465
Target Start/End: Original strand, 20771890 - 20772092
Alignment:
Q  263 acactttaaataagcacttacaacatgtcaaaacaccaatc-atatatcaaatttcatgaatttcactcattttaacataaaacttaaaataacaacatt 361  Q
    |||||| || |||||||||||||||  || ||||| ||||  ||  |||||||||||||  ||  | ||| |||| ||||||||| ||||  |||||||     
T  20771890 acacttcaattaagcacttacaacacatccaaacatcaatttatgcatcaaatttcatgttttctattcactttatcataaaactcaaaaacacaacatc 20771989  T
Q  362 aacacaatcaaatcatagatttagcatatcaacatcatggattcacaaataatcacatactcataatcacaacaacatactagagcacaaattcaacatc 461  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| || || |||||| ||| || ||||||||| |||||||| |||    
T  20771990 aacacaattaaatcatggatttagtatatcaacatcatggattcacaaataatcacaaacccaaaatcac-acatcaaactagagcataaattcaatatc 20772088  T
Q  462 aatt 465  Q
    ||||    
T  20772089 aatt 20772092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17338313 - 17338348
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagaca 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  17338313 aagctaacatccatatctacaactttcatgaagaca 17338348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 460
Target Start/End: Complemental strand, 9853036 - 9852966
Alignment:
Q  390 tcaacatcatggattcacaaataatcacatactcataatcacaacaacatactagagcacaaattcaacat 460  Q
    |||| |||| |||||  ||||||| || |||| |||||||| |||||||||| ||| ||||||||||||||    
T  9853036 tcaatatcaaggattttcaaataaacatatacccataatcataacaacatacaagaacacaaattcaacat 9852966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12249680 - 12249634
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacacttaaactcaa 47  Q
    |||||||||||||||| |||||||||||||| ||| | |||||||||    
T  12249680 aagctaacatccatatctacaactttcatgaggacgcataaactcaa 12249634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18321826 - 18321768
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacacttaaactcaatgcagaacagaa 59  Q
    |||||||||||||||| ||||| |||||||||||||| ||||  |||| | ||||||||    
T  18321826 aagctaacatccatatctacaattttcatgaagacacctaaatccaattcggaacagaa 18321768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18453120 - 18453178
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacacttaaactcaatgcagaacagaa 59  Q
    |||||||||||||||| ||||| |||||||||||||| ||||  |||| | ||||||||    
T  18453120 aagctaacatccatatctacaattttcatgaagacacctaaatccaattcggaacagaa 18453178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15888966 - 15888930
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacac 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  15888966 aagctaacatgcatatctacaactttcatgaagacac 15888930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35189740 - 35189776
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacac 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  35189740 aagctaacattcatatatacaactttcaagaagacac 35189776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 36576119 - 36576048
Alignment:
Q  391 caacatcatggattcacaaataatcacatactcataatcacaacaacatactagagcacaaattcaacatca 462  Q
    ||||||||||||||||||| ||| ||||||| | |||||||||||| ||| |||| ||||||||||| ||||    
T  36576119 caacatcatggattcacaattaaacacatacccgtaatcacaacaatatattagaacacaaattcaaaatca 36576048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23034859 - 23034902
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacacttaaact 44  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||    
T  23034859 aagctaacatccatatctacaaatttcatgaagacacctaaact 23034902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 31343559 - 31343611
Alignment:
Q  7 acatccatatatacaactttcatgaagacacttaaactcaatgcagaacagaa 59  Q
    ||||| |||| |||||||||||||||||||| |||| ||||| | ||||||||    
T  31343559 acatcaatatctacaactttcatgaagacacctaaattcaattcggaacagaa 31343611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 8501 - 8441
Alignment:
Q  381 tttagcatatcaacatcatggattcacaaataatcacatactcataatcacaacaacatac 441  Q
    |||| |||||||||| ||||| ||| ||| |||||| ||||||||||||||||||||||||    
T  8501 tttaacatatcaacaacatgggttctcaattaatcatatactcataatcacaacaacatac 8441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 466
Target Start/End: Original strand, 1193 - 1288
Alignment:
Q  371 aaatcatagatttagcatatcaacatcatggattcacaaataatcacatactcataatcacaacaacatactagagcacaaattcaacatcaattc 466  Q
    ||||||| |||||||||||| || |||||  ||||| || |||||||||||  | | ||||||||||| |||||||||| ||||| |||| |||||    
T  1193 aaatcatggatttagcatataaatatcataaattcataactaatcacatacctaaattcacaacaacaaactagagcacgaattcgacattaattc 1288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 438
Target Start/End: Complemental strand, 6460 - 6291
Alignment:
Q  272 ataagcacttacaacatgtcaaaacaccaatcatatatcaaatttcatgaatt---tcactcattttaacataaaacttaaaataacaacattaacacaa 368  Q
    |||||||||||  |||  |||||||| |||| ||| ||| |||||||||| ||   | ||||| |||||||||||||| ||||  ||||||| | |||||    
T  6460 ataagcacttattacacatcaaaacatcaattatacatcgaatttcatgatttgttttactcaatttaacataaaactcaaaaacacaacataaccacaa 6361  T
Q  369 tcaaatcatagatttagcatatcaacatcatggattcacaaataatcacatactcataatcacaacaaca 438  Q
    |  ||||||  |||||||| | |||||||||  ||| | || ||||||||||| || ||||| |||||||    
T  6360 ttgaatcatgaatttagcacaacaacatcataaatttagaattaatcacatacccaaaatcataacaaca 6291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 25581773 - 25581735
Alignment:
Q  5 taacatccatatatacaactttcatgaagacacttaaac 43  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  25581773 taacatccatatatacaactttcatgatgacacttaaac 25581735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 32948472 - 32948513
Alignment:
Q  5 taacatccatatatacaactttcatgaagacacttaaactca 46  Q
    ||||||||||||||||| ||||||||||||||  ||||||||    
T  32948472 taacatccatatatacatctttcatgaagacatctaaactca 32948513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 13938630 - 13938674
Alignment:
Q  4 ctaacatccatatatacaactttcatgaagacacttaaactcaat 48  Q
    ||||||| ||||| |||||||||||||||||||| ||||| ||||    
T  13938630 ctaacattcatatctacaactttcatgaagacacataaacccaat 13938674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 466
Target Start/End: Complemental strand, 32657440 - 32657354
Alignment:
Q  380 atttagcatatcaacatcatggattcacaaataatcacatactcataatcacaacaacatactagagcacaaattcaacatcaattc 466  Q
    ||||| |||||||| |||||| ||||| | ||||  ||||||||| ||||||||||||  | ||||||||||||| ||||| |||||    
T  32657440 atttaacatatcaaaatcatgaattcagagataagaacatactcaaaatcacaacaaccaattagagcacaaatttaacatgaattc 32657354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27868713 - 27868677
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacac 37  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  27868713 aagctaacattcatatatacaacttttatgaagacac 27868677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 24698124 - 24698066
Alignment:
Q  402 attcacaaataatcacatactcataatcacaacaacatactagagcacaaattcaacat 460  Q
    |||||||||||| || |||| ||||| ||||||||||| ||||| || |||||||||||    
T  24698124 attcacaaataaacatatacccataaccacaacaacatgctagatcataaattcaacat 24698066  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9798964 - 9798928
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacac 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  9798964 aagctaacattcatatctacaactttcatgaagacac 9798928  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 465
Target Start/End: Complemental strand, 32129290 - 32129229
Alignment:
Q  404 tcacaaataatcacatactcataatcacaacaacatactagagcacaaattcaacatcaatt 465  Q
    ||||||| ||||| |||||||||||||||| |||||| || | ||||| |||| ||||||||    
T  32129290 tcacaaacaatcatatactcataatcacaataacatattataacacaatttcatcatcaatt 32129229  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18985667 - 18985631
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacac 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  18985667 aagctaacattcatatctacaactttcatgaagacac 18985631  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22497638 - 22497602
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacac 37  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  22497638 aagctaacaaccatatctacaactttcatgaagacac 22497602  T

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Target: scaffold0290 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12287 - 12251
Alignment:
Q  1 aagctaacatccatatatacaactttcatgaagacac 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  12287 aagctaacattcatatctacaactttcatgaagacac 12251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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