View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_low_6 (Length: 460)
Name: NF17682_low_6
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 28111276 - 28111627
Alignment:
| Q |
19 |
caaagatgaaacaggtccggtggtggataataattgaaaccgagccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28111276 |
caaagatgaaacaggtccggtggtggataataattgaaaccgagccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagat |
28111375 |
T |
|
| Q |
119 |
gatccgacacctccgggaccccatgacacaacacacaggaaagagcagaatctggtggtaagacatgcctcctggaaagattgactctggtcgggatcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28111376 |
gatccgacacctccgggaccccatgacacaacacacaggaaagagcagaatctggtggtaagacatgcctcctgaaaagattgactctggtcgggatcct |
28111475 |
T |
|
| Q |
219 |
tccacgtaaaagcttccaagaaaaggcaatcaccttggccggtgccgggcttttccaaatatgtgtgaacgccaacagctgcacctctgacagtgggtca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28111476 |
tccacgtaaaagcttccaagaaaaggcaatcaccttggccggtgccgggcttttccaaatatgtgtgaacgccaacagctgcacctctgacagtgggtca |
28111575 |
T |
|
| Q |
319 |
gacaccaccatgtcatccaatttcctatacatggaactcaccgaaaaggaac |
370 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28111576 |
gacaccactatgtcatccaatttcctatacatggaactcaccgaaaaggaac |
28111627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 369 - 434
Target Start/End: Original strand, 40383201 - 40383266
Alignment:
| Q |
369 |
actctctccatctaacattagggtgtcctattttagttttacaccattgaaatgcaataaataagg |
434 |
Q |
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| T |
40383201 |
actctctccgtctaacattagggtgtcctattttagttttacatgattgaaatgcaataaataagg |
40383266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 33131602 - 33131705
Alignment:
| Q |
34 |
tccggtggtggataataattgaaaccgagccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatccgacacctccg |
133 |
Q |
| |
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||||||||||||| ||| | ||||| |||||| |||||| || ||||||| |||||||||||| ||||||| ||| || | |||||| ||| | |||| |
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| T |
33131602 |
tccggtggtggatgatagtcaaaaccaagccatctcagaagattagtccaaattgctgttgccgtcacacaatggaggaataaatgatcggactcttccg |
33131701 |
T |
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| Q |
134 |
ggac |
137 |
Q |
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|||| |
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| T |
33131702 |
ggac |
33131705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 33131776 - 33131847
Alignment:
| Q |
208 |
gtcgggatccttccacgtaaaagcttccaagaaaaggcaatcaccttggccggtgccgggcttttccaaata |
279 |
Q |
| |
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||||||||||| | || || ||||||||||| |||||||||||||| | ||||||||| || ||||||||| |
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| T |
33131776 |
gtcgggatcctatcgcgaaagagcttccaagagaaggcaatcacctttgtcggtgccggactcttccaaata |
33131847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 1611290 - 1611236
Alignment:
| Q |
226 |
aaaagcttccaagaaaaggcaatcaccttggccggtgccgggcttttccaaatat |
280 |
Q |
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|||||||||||||| ||||| | ||| |||| ||||||||| ||||||||||||| |
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| T |
1611290 |
aaaagcttccaagagaaggccaccactttggacggtgccggacttttccaaatat |
1611236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 24836973 - 24836738
Alignment:
| Q |
19 |
caaagatgaaacaggtccggtggtggataataattgaaaccgagccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagat |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24836973 |
caaagatgaaacaggtccggtggtcgataataattgaaaccgatccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagat |
24836874 |
T |
|
| Q |
119 |
gatccgacacctccgggaccccatgacacaacacacaggaaagagcagaatctggtggtaagacatgcctcctggaaagattgactctggtcgggatcct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24836873 |
gatccgacacctccgggaccccatgacacaacgcacaggaaagagcagaatctggtggtaagacatgcctcctgaaaagattgactctggtcgggatcct |
24836774 |
T |
|
| Q |
219 |
tccacgtaaaagcttccaagaaaaggcaatcacctt |
254 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |
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| T |
24836773 |
tccacgtaaaagcttcccagaaaaggcaatcacctt |
24836738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 34326198 - 34325847
Alignment:
| Q |
19 |
caaagatgaaacaggtccggtggtggataataattgaaaccgagccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagat |
118 |
Q |
| |
|
||||||||||||| |||||||| |||| | |||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||| ||||| ||||||| |
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| T |
34326198 |
caaagatgaaacaaatccggtggcggatgaaaattgaaaccgagccacgacagaagcttggttcaaactgctgttgccataatacagttgaggaaaagat |
34326099 |
T |
|
| Q |
119 |
gatccgacacctccgggaccccatgacacaacacacaggaaagagcagaatctggtggtaagacatgcctcctggaaagattgactctggtcgggatcct |
218 |
Q |
| |
|
|||||| ||| | ||| ||||||| |||||||||||||||||||| || || ||||| | |||||||||||| || || ||| |||| ||||| ||||| |
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| T |
34326098 |
gatccgtcactttcggaaccccatcacacaacacacaggaaagagtggagtccggtggaaggacatgcctcctcgataggttggctctagtcggtatcct |
34325999 |
T |
|
| Q |
219 |
tccacgtaaaagcttccaagaaaaggcaatcaccttggccggtgccgggcttttccaaatatgtgtgaacgccaacagctgcacctctgacagtgggtca |
318 |
Q |
| |
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| | || | || |||||||||||||||||||||||| | ||||||||| || ||||||||||||| ||||| ||||||||||||| | | ||| | |
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| T |
34325998 |
ttcgcgaagaaacttccaagaaaaggcaatcacctttggcggtgccggactcttccaaatatgtgaaaacgctgacagctgcacctccgttcgcgggacg |
34325899 |
T |
|
| Q |
319 |
gacaccaccatgtcatccaatttcctatacatggaactcaccgaaaaggaac |
370 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34325898 |
atcaccaccaattcatccaatttcctatacatggaactcaccgaaaaggaac |
34325847 |
T |
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