View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17682_low_8 (Length: 413)

Name: NF17682_low_8
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17682_low_8
NF17682_low_8
[»] chr3 (3 HSPs)
chr3 (178-399)||(54027766-54027987)
chr3 (137-300)||(51450671-51450832)
chr3 (137-300)||(52136344-52136503)
[»] scaffold0279 (1 HSPs)
scaffold0279 (137-300)||(18412-18573)
[»] chr5 (3 HSPs)
chr5 (137-300)||(11069270-11069431)
chr5 (154-300)||(9121159-9121305)
chr5 (138-300)||(2078445-2078605)
[»] chr2 (4 HSPs)
chr2 (137-204)||(43920779-43920847)
chr2 (172-291)||(16290807-16290924)
chr2 (137-206)||(23714879-23714948)
chr2 (137-206)||(24102551-24102620)
[»] chr1 (5 HSPs)
chr1 (137-300)||(49350378-49350539)
chr1 (137-300)||(52921008-52921169)
chr1 (216-268)||(1290127-1290179)
chr1 (161-197)||(1651627-1651663)
chr1 (137-197)||(9599937-9599997)
[»] chr7 (1 HSPs)
chr7 (137-223)||(2793071-2793157)
[»] chr6 (2 HSPs)
chr6 (137-297)||(20430477-20430635)
chr6 (172-300)||(6079639-6079765)
[»] chr4 (4 HSPs)
chr4 (146-249)||(55770340-55770443)
chr4 (146-249)||(55834596-55834699)
chr4 (172-300)||(27453071-27453197)
chr4 (172-291)||(16000290-16000407)
[»] scaffold0001 (1 HSPs)
scaffold0001 (172-300)||(440148-440274)
[»] chr8 (1 HSPs)
chr8 (137-300)||(15218188-15218349)
[»] scaffold0245 (1 HSPs)
scaffold0245 (216-268)||(16532-16584)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 178 - 399
Target Start/End: Complemental strand, 54027987 - 54027766
Alignment:
Q  178 aaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccgttgcccgaaagcagtacgctgtatagctcgagaacagtgag 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  54027987 aaactttgtccgatctctataacatgaattaaatacacaatagtgtgaaggctaagccgttacccgaaagcagtacgctgtatagctcaagaacagtgag 54027888  T
Q  278 tcaaatgagcaaggaccgctgcaagaatgatatgatttttgatagaacgttatgaggtcgttcggtacatcccacctatcccacttaatgggataatact 377  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  54027887 tcaaatgagcaaggactgctgcaaaaatgatatgatttttgatagaacattatgaggtcgttctgttcatcccacctatcctacttaatgggataatact 54027788  T
Q  378 tgattattgttgttgtagtatt 399  Q
    ||||||||||||||||||||||    
T  54027787 tgattattgttgttgtagtatt 54027766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 300
Target Start/End: Complemental strand, 51450832 - 51450671
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccg 236  Q
    ||||||||||||||||||||||  | | | || | ||||||||||||||||  || |||||  |||| |  ||||||  |||||||| || |||||| ||    
T  51450832 gtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatatctatggcatggaccaaatacgaaatagtgtgaatgctaggtcg 51450733  T
Q  237 ttgcccgaaagcagtacgctgtatagctcgagaacagtgagtcaaatgagcaaggaccgctgca 300  Q
    ||||||| |||||   |||||||| | ||||| |||||  ||||||||||||||| ||||||||    
T  51450732 ttgcccggaagcaacgcgctgtatggttcgagtacagt--gtcaaatgagcaagggccgctgca 51450671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 300
Target Start/End: Original strand, 52136344 - 52136503
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccg 236  Q
    ||||||||||||||||||||||  | | |  | | ||||||||||||||||  |||||||| ||||  |  ||||||  |||||||| || |||||| ||    
T  52136344 gtaaaaggagagggttgtgttaggccttgatagccaacgtaaaactttgtcgaatctctatgacatagaccaaatacgaaatagtgtgaatgctaggtcg 52136443  T
Q  237 ttgcccgaaagcagtacgctgtatagctcgagaacagtgagtcaaatgagcaaggaccgctgca 300  Q
    ||||||| |||||  ||| ||||| ||||||| |    | ||||||||||||||| ||||||||    
T  52136444 ttgcccggaagcaacacgttgtatggctcgagta----gtgtcaaatgagcaagggccgctgca 52136503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 137 - 300
Target Start/End: Original strand, 18412 - 18573
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccg 236  Q
    ||||||||||| ||||||||||| | | | |||| ||||||||||||||||  |||||||| ||||| |  ||||||  |||||||| |  |||||| ||    
T  18412 gtaaaaggagaaggttgtgttaagcctcgacaaccaacgtaaaactttgtcgaatctctatgacatggaccaaatacgaaatagtgtgattgctaggtcg 18511  T
Q  237 ttgcccgaaagcagtacgctgtatagctcgagaacagtgagtcaaatgagcaaggaccgctgca 300  Q
    ||||||| |||||   ||||||||||||| || | |||  ||||||||||||||| ||||||||    
T  18512 ttgcccggaagcaacgcgctgtatagctcaagtatagt--gtcaaatgagcaagggccgctgca 18573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 137 - 300
Target Start/End: Complemental strand, 11069431 - 11069270
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccg 236  Q
    |||||||||||| |||||||||  | |   |||| |||| |||||||||||  |||||||| ||||| |  ||||||| |||||||| || |||||| ||    
T  11069431 gtaaaaggagagcgttgtgttaggcctcaacaaccaacgcaaaactttgtcgaatctctatgacatggaccaaatacaaaatagtgtgaatgctaggtcg 11069332  T
Q  237 ttgcccgaaagcagtacgctgtatagctcgagaacagtgagtcaaatgagcaaggaccgctgca 300  Q
    ||||| | |||||  ||||||||||||||||| |||||  |||||||||| |||| ||||||||    
T  11069331 ttgcctggaagcaacacgctgtatagctcgagtacagt--gtcaaatgagaaagggccgctgca 11069270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 9121305 - 9121159
Alignment:
Q  154 tgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccgttgcccgaaagca--gt 251  Q
    |||||| |||||||||||||| ||||||||||||| |||| | | | |||||| |||||| ||||||||| ||||||||| |||||||   |||||  ||    
T  9121305 tgttaagcttgggcaacaaacataaaactttgtccaatctttttgatatgaatcaaatacgcaatagtgttaaggctaggtcgttgcctagaagcaacgt 9121206  T
Q  252 acgctgtatagctcgagaacagtgagtcaaatgagcaaggaccgctgca 300  Q
     |  ||||||||||||| || ||  ||||||||||||||| ||||||||    
T  9121205 gctgtgtatagctcgagtacggt--gtcaaatgagcaagggccgctgca 9121159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 300
Target Start/End: Complemental strand, 2078605 - 2078445
Alignment:
Q  138 taaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccgt 237  Q
    |||||||||||||||||||||  | | | || | || |||||||||||||  |||||||| ||||| |  |||| || ||||| || || |||||| |||    
T  2078605 taaaaggagagggttgtgttaggcctcgacagccaaagtaaaactttgtcgaatctctatgacatggaccaaatgcaaaatagcgtgaatgctaggtcgt 2078506  T
Q  238 tgcccgaaagcagtacgctgtatagctcgagaacagtgagtcaaatgagcaaggaccgctgca 300  Q
    |||||| |||||   || ||||| ||||||| |||||  ||||||||||||||  ||||||||    
T  2078505 tgcccggaagcaacgcgttgtatggctcgagtacagt--gtcaaatgagcaagagccgctgca 2078445  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 43920847 - 43920779
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaac-aaacgtaaaactttgtccgatctctataacatga 204  Q
    |||||||||||||||||||||||||||| ||| | |||||||||||||||||| |||||||| ||||||    
T  43920847 gtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatga 43920779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 291
Target Start/End: Original strand, 16290807 - 16290924
Alignment:
Q  172 aacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccgttgcccgaaagcagtacgctgtatagctcgagaac 271  Q
    ||||||||||||||||  |||||||| ||||| |  ||||||  |||||||| || |||||| ||||||||| |||||  ||  |||||  |||||| ||    
T  16290807 aacgtaaaactttgtcgaatctctatgacatggaccaaatacgaaatagtgtgaatgctaggtcgttgcccggaagcaacaccttgtatgactcgagtac 16290906  T
Q  272 agtgagtcaaatgagcaagg 291  Q
    |||  |||||||||||||||    
T  16290907 agt--gtcaaatgagcaagg 16290924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 23714948 - 23714879
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaat 206  Q
    ||||||| |||||||||||||| ||||| ||||  ||||||||||||| ||  ||| |||| ||||||||    
T  23714948 gtaaaagaagagggttgtgttagacttgagcaattaacgtaaaactttatctaatccctatgacatgaat 23714879  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 24102620 - 24102551
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaat 206  Q
    ||||||| |||||||||||||| ||||| ||||  ||||||||||||| ||  ||| |||| ||||||||    
T  24102620 gtaaaagaagagggttgtgttagacttgagcaattaacgtaaaactttatctaatccctatgacatgaat 24102551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 300
Target Start/End: Complemental strand, 49350539 - 49350378
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccg 236  Q
    ||||||||||||||||||||||  | | | || | ||||||||||||||||  |||||||| ||||| |  ||||||  |||||||| || |||||| ||    
T  49350539 gtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatggaccaaatacgaaatagtgtgaatgctaggtcg 49350440  T
Q  237 ttgcccgaaagcagtacgctgtatagctcgagaacagtgagtcaaatgagcaaggaccgctgca 300  Q
    ||||||  |||||   |||||||| |||||||  ||||  ||||||||||||||| ||||||||    
T  49350439 ttgcccagaagcaacgcgctgtatggctcgagtgcagt--gtcaaatgagcaagggccgctgca 49350378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 300
Target Start/End: Original strand, 52921008 - 52921169
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccg 236  Q
    ||||||||||||||||||||||  | | | || | ||| ||||||||||||  |||||||| ||||| |  ||||||  |||||||| || |||||| ||    
T  52921008 gtaaaaggagagggttgtgttaggccttgacagccaacataaaactttgtcgaatctctatgacatggaccaaatacgaaatagtgtgaatgctaggtcg 52921107  T
Q  237 ttgcccgaaagcagtacgctgtatagctcgagaacagtgagtcaaatgagcaaggaccgctgca 300  Q
    ||||| | || ||   |||||||||||||||| |||||  ||||||||||||||| ||||||||    
T  52921108 ttgccaggaatcaacgcgctgtatagctcgagtacagt--gtcaaatgagcaagggccgctgca 52921169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 1290179 - 1290127
Alignment:
Q  216 aatagtgtaaaggctaggccgttgcccgaaagcagtacgctgtatagctcgag 268  Q
    |||||||| || |||||||||||||||| |||||   ||||||||||||||||    
T  1290179 aatagtgtgaatgctaggccgttgcccggaagcaacgcgctgtatagctcgag 1290127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 1651663 - 1651627
Alignment:
Q  161 cttgggcaacaaacgtaaaactttgtccgatctctat 197  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  1651663 cttgggcagcaaacataaaactttgtccgatctctat 1651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 9599937 - 9599997
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctat 197  Q
    ||||||||||||||||||||||  | | | || | |||||||||||||||| |||||||||    
T  9599937 gtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcggatctctat 9599997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 2793071 - 2793157
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgt 223  Q
    ||||||||||| |||| |||||| |||||||| ||||| ||||||||||||| || ||||| ||||||||  ||||| |||||||||    
T  2793071 gtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatatctatgacatgaatagaatacgcaatagtgt 2793157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 297
Target Start/End: Complemental strand, 20430635 - 20430477
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccg 236  Q
    ||||||||||||||||||||||  | | | || | |||||||||||||||   |||||||| |||||||  ||||||| |||||||| ||   |||| ||    
T  20430635 gtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacatgaaccaaatacaaaatagtgtgaattttaggtcg 20430536  T
Q  237 ttgcccgaaagcagtacgctgtatagctcgagaacagtgagtcaaatgagcaaggaccgct 297  Q
    ||||||| |||||   ||||||||||||||||  ||||  ||||||||| ||||| |||||    
T  20430535 ttgcccggaagcaacgcgctgtatagctcgagtgcagt--gtcaaatgaacaagggccgct 20430477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 300
Target Start/End: Original strand, 6079639 - 6079765
Alignment:
Q  172 aacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccgttgcccgaaagcagtacgctgtatagctcgagaac 271  Q
    ||||||||||||||||  |||||||| ||||| |  | ||||  |||||||| || |||||| ||||||||| |||||   || ||||| ||||||| ||    
T  6079639 aacgtaaaactttgtcgaatctctatgacatggaccacatacgaaatagtgtgaatgctaggtcgttgcccggaagcaactcgttgtatggctcgagtac 6079738  T
Q  272 agtgagtcaaatgagcaaggaccgctgca 300  Q
    |||  ||||||||||||||| ||||||||    
T  6079739 agt--gtcaaatgagcaagggccgctgca 6079765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 249
Target Start/End: Complemental strand, 55770443 - 55770340
Alignment:
Q  146 gagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccgttgcccgaa 245  Q
    ||||||||||||| || | | ||| |||| ||||||||||||| |||||||| ||| | || ||||||  |||||||| || |||||| |||||||||||    
T  55770443 gagggttgtgttagaccttgacaaaaaacataaaactttgtccaatctctatgacaaggatcaaatacggaatagtgtgaatgctaggtcgttgcccgaa 55770344  T
Q  246 agca 249  Q
    ||||    
T  55770343 agca 55770340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 249
Target Start/End: Complemental strand, 55834699 - 55834596
Alignment:
Q  146 gagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccgttgcccgaa 245  Q
    ||||||||||||| || | | ||| |||| ||||||||||||| |||||||| ||| | || ||||||  |||||||| || |||||| |||||||||||    
T  55834699 gagggttgtgttagaccttgacaaaaaacataaaactttgtccaatctctatgacaaggatcaaatacggaatagtgtgaatgctaggtcgttgcccgaa 55834600  T
Q  246 agca 249  Q
    ||||    
T  55834599 agca 55834596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 300
Target Start/End: Complemental strand, 27453197 - 27453071
Alignment:
Q  172 aacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccgttgcccgaaagcagtacgctgtatagctcgagaac 271  Q
    |||||||||||||| |  |||||||| ||||| |  ||||||| |||||||| || | |||| |||||||   |||||  ||||||||||||||||| ||    
T  27453197 aacgtaaaactttgccgaatctctatgacatggaccaaatacaaaatagtgtgaatgttaggtcgttgcctagaagcaacacgctgtatagctcgagtac 27453098  T
Q  272 agtgagtcaaatgagcaaggaccgctgca 300  Q
    | |  ||||||||||||||| ||||||||    
T  27453097 aat--gtcaaatgagcaagggccgctgca 27453071  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 291
Target Start/End: Original strand, 16000290 - 16000407
Alignment:
Q  172 aacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccgttgcccgaaagcagtacgctgtatagctcgagaac 271  Q
    |||||||||||||||    ||||||| ||||| | ||| || | |||||||| || | |||| |||||||| |||||| | | |||||||||||||| ||    
T  16000290 aacgtaaaactttgttgagtctctatgacatggactaactataaaatagtgtgaatgttaggtcgttgcccaaaagcaatgcactgtatagctcgagtac 16000389  T
Q  272 agtgagtcaaatgagcaagg 291  Q
    | |  |||||||||||||||    
T  16000390 aat--gtcaaatgagcaagg 16000407  T

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Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 300
Target Start/End: Original strand, 440148 - 440274
Alignment:
Q  172 aacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccgttgcccgaaagcagtacgctgtatagctcgagaac 271  Q
    ||||||||||||||||  |||||||| ||||| |  ||||||  |||||||| || |||||| |||| |||  | | | | |||||||||||||||| ||    
T  440148 aacgtaaaactttgtcaaatctctatgacatggaccaaatacgaaatagtgtgaatgctaggtcgtttcccagaggaaatgcgctgtatagctcgagtac 440247  T
Q  272 agtgagtcaaatgagcaaggaccgctgca 300  Q
    |||  ||||||||||||||| ||||||||    
T  440248 agt--gtcaaatgagcaagggccgctgca 440274  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 300
Target Start/End: Complemental strand, 15218349 - 15218188
Alignment:
Q  137 gtaaaaggagagggttgtgttaaacttgggcaacaaacgtaaaactttgtccgatctctataacatgaattaaatacacaatagtgtaaaggctaggccg 236  Q
    ||||||||||||||||||||||| | | |  |   ||||||||| ||||||  |||||||| ||||| |  |||||   |||||||  || |||||| ||    
T  15218349 gtaaaaggagagggttgtgttaagcctcgatagtcaacgtaaaattttgtcgaatctctatgacatggaccaaatatgaaatagtgggaatgctaggtcg 15218250  T
Q  237 ttgcccgaaagcagtacgctgtatagctcgagaacagtgagtcaaatgagcaaggaccgctgca 300  Q
    || |||| |||||   |||||||||||||||| ||||||  |||||||||||||| ||||||||    
T  15218249 tttcccggaagcaacgcgctgtatagctcgagtacagtg--tcaaatgagcaagggccgctgca 15218188  T

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Target: scaffold0245 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 16584 - 16532
Alignment:
Q  216 aatagtgtaaaggctaggccgttgcccgaaagcagtacgctgtatagctcgag 268  Q
    |||||||| || |||||||||||||||| |||||   ||||||||||||||||    
T  16584 aatagtgtgaatgctaggccgttgcccggaagcaacgcgctgtatagctcgag 16532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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