View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17682_low_9 (Length: 398)
Name: NF17682_low_9
Description: NF17682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17682_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 12164458 - 12164301
Alignment:
| Q |
2 |
atatccacccctacctccataaccaccgccccaaccgccatagccgccaccacgccatggaccaccgtaacctccacctccataatatccatttgtgaca |
101 |
Q |
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| T |
12164458 |
atatccacccctacctccataaccaccgccccaaccgccatagccgccaccacgccatggaccaccgtaacctccacctccataatatccatttgtgtca |
12164359 |
T |
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| Q |
102 |
attttttctacaaatcaagaaaaatgtatacaatcagattgtagtaaaattcacaacat |
160 |
Q |
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| T |
12164358 |
attttttctacaaatcaag-aaaatatatacaatcagattgtagtaaaattctcaacat |
12164301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 289 - 398
Target Start/End: Complemental strand, 12164172 - 12164063
Alignment:
| Q |
289 |
gaagctagcttattttaatacaacgtacaaataataagagttttattaaacttagtaaagttataataaatatataataattggtggaaattatactaaa |
388 |
Q |
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| T |
12164172 |
gaagctagcttatttccatacaacgtacaaataataagagttttattaaacttagtaaagttaaaataaatatataataattggtggaaattatactaaa |
12164073 |
T |
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| Q |
389 |
tgttcaaaac |
398 |
Q |
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| T |
12164072 |
tgttcaaaac |
12164063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 12150064 - 12149960
Alignment:
| Q |
2 |
atatccacccctacctccataaccaccgccccaaccgccatagccgccaccacgccatggaccaccgtaacctccacctccataatatccatttgtgaca |
101 |
Q |
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| T |
12150064 |
atatccacccctaccaccataaccaccgcgccaaccaccata------accacccct---accaccataacccccacctccataatatccatttgtgtct |
12149974 |
T |
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| Q |
102 |
attttttctacaaa |
115 |
Q |
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| T |
12149973 |
attttttctacaaa |
12149960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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