View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17683_high_12 (Length: 224)
Name: NF17683_high_12
Description: NF17683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17683_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 50471075 - 50470857
Alignment:
| Q |
1 |
ttttcaaaaactttatgcttttactagtagtactgttgttgttgttgctgctgctgcttctgtatgtttttgaagtattggctactcttctccatttctt |
100 |
Q |
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| T |
50471075 |
ttttcaaaaactttatgcttttactagtagtactgttgttgttgatgctgctgct---tctgtatgtttttgaagtattggctactcttctccatttctt |
50470979 |
T |
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| Q |
101 |
aaggatctgttgaagtctaacgatttctctgattttgttaggtttctttggtggatccatgttgatattatggatgtatatatatatggtggtgtgcctc |
200 |
Q |
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| T |
50470978 |
aaggatctgttgaagtctaacgatttctctgattttgttaggtttctttggtggatccatgttgatattatggatgtatat--atatggtggtgtgcctc |
50470881 |
T |
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| Q |
201 |
tgtttatgagatttggtttatgta |
224 |
Q |
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| T |
50470880 |
tgtttatgagatttggtttatgta |
50470857 |
T |
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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 1197267 - 1197328
Alignment:
| Q |
88 |
ttctccatttcttaaggatctgttgaagtctaacgatttctctgattttgttaggtttcttt |
149 |
Q |
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| T |
1197267 |
ttctccatttcttaaggatctgttgaagtctaacaatttctctaattttgttagatttcttt |
1197328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 7289303 - 7289254
Alignment:
| Q |
100 |
taaggatctgttgaagtctaacgatttctctgattttgttaggtttcttt |
149 |
Q |
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| T |
7289303 |
taaggatttgttgaagtctaacgatttctctaattttgttagatttcttt |
7289254 |
T |
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