View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17683_high_5 (Length: 349)
Name: NF17683_high_5
Description: NF17683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17683_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 53165645 - 53165979
Alignment:
| Q |
15 |
ctgtgactgagtctagacagttagttgggaatgctatggaagatacagttcgtgtaacagtattgtcaattgtgatttatatgccaattcattgtttgtt |
114 |
Q |
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| T |
53165645 |
ctgtgactgagtctagacagttagttgggaatgctatggaagatacagttcgtgtaacagtattgtcaattgtgatttatatgccaattcattgtttgtt |
53165744 |
T |
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| Q |
115 |
gcattctatacatctgctttctctgtttttactcttacctaatttctatgtctatttttggttgtaattggcccggtatgatgcatttccagaccttgnn |
214 |
Q |
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| T |
53165745 |
gcattctatacatctgctttctctgtttttactcttacctaatttctatgtctatttttggttgtaattggcccggtatgatgcatttccagaccttgtt |
53165844 |
T |
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| Q |
215 |
nnnnnggaggagtctgcatcataaagttagatgcatagtgaatgaatttaaatcacaccatattcttctggtagcgtacaggaattggtggatgtgataa |
314 |
Q |
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| T |
53165845 |
tttttggaggagtctgcatcataaagttagatgcatagtgaatgaatttaaatcacaccatattcttctggtagcgtacaggaattggtggatgtgataa |
53165944 |
T |
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| Q |
315 |
agatgtagctacagagagttttaaagggaggagag |
349 |
Q |
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| T |
53165945 |
agatgtagctacagagagttttaaagggaggagag |
53165979 |
T |
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