View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17683_high_8 (Length: 316)

Name: NF17683_high_8
Description: NF17683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17683_high_8
NF17683_high_8
[»] chr2 (15 HSPs)
chr2 (1-307)||(28215701-28216007)
chr2 (120-252)||(28220224-28220356)
chr2 (59-156)||(32309070-32309167)
chr2 (59-156)||(32799899-32799996)
chr2 (64-156)||(32565668-32565760)
chr2 (64-156)||(32806853-32806945)
chr2 (64-156)||(32815290-32815382)
chr2 (170-295)||(32309226-32309354)
chr2 (170-295)||(32565481-32565609)
chr2 (170-295)||(32799712-32799840)
chr2 (170-295)||(32806666-32806794)
chr2 (170-295)||(32815103-32815231)
chr2 (1-99)||(28220125-28220227)
chr2 (231-307)||(28220447-28220523)
chr2 (72-101)||(28216011-28216040)
[»] chr6 (2 HSPs)
chr6 (64-156)||(301229-301321)
chr6 (155-295)||(301362-301500)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 28216007 - 28215701
Alignment:
Q  1 ataacttcccaaacaagtcttcactttcccgcttctattctcttctccttcactccagcatcatcatcatcaagaaaatgaggagattcttcatcttcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28216007 ataacttcccaaacaagtcttcactttcctgcttctattctcttctccttcactccagcatcatcatcatcaagaaaatgaggagattcttcatcttcaa 28215908  T
Q  101 cacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtcaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28215907 cacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtgaag 28215808  T
Q  201 ttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215807 ttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaata 28215708  T
Q  301 ttcttcg 307  Q
    || ||||    
T  28215707 ttgttcg 28215701  T

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Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 28220224 - 28220356
Alignment:
Q  120 ttcattgcagtccttcctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgt 219  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28220224 ttcattgcagtcctttctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtgaagttagctggtatttttccgt 28220323  T
Q  220 ttgatttcagtgaaagtatcagagatggttcca 252  Q
    ||||||||| | |||| ||||||||||||||||    
T  28220324 ttgatttcaatcaaagaatcagagatggttcca 28220356  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 32309070 - 32309167
Alignment:
Q  59 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 156  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32309070 catcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32309167  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 32799996 - 32799899
Alignment:
Q  59 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 156  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||||||||||    
T  32799996 catcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaa 32799899  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 32565760 - 32565668
Alignment:
Q  64 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 156  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32565760 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32565668  T

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Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 32806945 - 32806853
Alignment:
Q  64 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 156  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| |||||||||||    
T  32806945 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttccctctctcagaa 32806853  T

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Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 32815382 - 32815290
Alignment:
Q  64 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 156  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32815382 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32815290  T

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Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 295
Target Start/End: Original strand, 32309226 - 32309354
Alignment:
Q  170 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 266  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32309226 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32309325  T
Q  267 ttctataaggattcttgccctgaagctga 295  Q
    ||||||| ||||||||||||| |||||||    
T  32309326 ttctatagggattcttgccctcaagctga 32309354  T

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Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 32565609 - 32565481
Alignment:
Q  170 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 266  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32565609 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32565510  T
Q  267 ttctataaggattcttgccctgaagctga 295  Q
    ||||||| ||||||||||||| |||||||    
T  32565509 ttctatagggattcttgccctcaagctga 32565481  T

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Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 32799840 - 32799712
Alignment:
Q  170 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 266  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32799840 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32799741  T
Q  267 ttctataaggattcttgccctgaagctga 295  Q
    ||||||| ||||||||||||| |||||||    
T  32799740 ttctatagggattcttgccctcaagctga 32799712  T

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Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 32806794 - 32806666
Alignment:
Q  170 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 266  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32806794 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32806695  T
Q  267 ttctataaggattcttgccctgaagctga 295  Q
    ||||||| ||||||||||||| |||||||    
T  32806694 ttctatagggattcttgccctcaagctga 32806666  T

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Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 32815231 - 32815103
Alignment:
Q  170 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 266  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32815231 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32815132  T
Q  267 ttctataaggattcttgccctgaagctga 295  Q
    ||||||| ||||||||||||| |||||||    
T  32815131 ttctatagggattcttgccctcaagctga 32815103  T

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Target: chr2; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28220125 - 28220227
Alignment:
Q  1 ataacttcccaaacaagtcttcact--ttcccgcttct--attctcttctccttcactccagcatcatcatcatcaagaaaatgaggagattcttcatct 96  Q
    ||||||||||||||||||||  |||  |||||||||||  || ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  28220125 ataacttcccaaacaagtctctactctttcccgcttctttatcctcttctccttcaatccagcatcattatcatcaagaaaatgaggagaatcttcatct 28220224  T
Q  97 tca 99  Q
    |||    
T  28220225 tca 28220227  T

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Target: chr2; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 231 - 307
Target Start/End: Original strand, 28220447 - 28220523
Alignment:
Q  231 gaaagtatcagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattcttcg 307  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  28220447 gaaagaatcagagatggttccaatcttcaatataatttctataaggtttcttgccctcaagctgagaatattgttcg 28220523  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 101
Target Start/End: Complemental strand, 28216040 - 28216011
Alignment:
Q  72 aagaaaatgaggagattcttcatcttcaac 101  Q
    ||||||||||||||||||||||||||||||    
T  28216040 aagaaaatgaggagattcttcatcttcaac 28216011  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 301229 - 301321
Alignment:
Q  64 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 156  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  301229 tcatcatcaagaaaatgagaagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctctttcagaa 301321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 295
Target Start/End: Original strand, 301362 - 301500
Alignment:
Q  155 aacaacttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaat 254  Q
    ||||||||||| |  ||||| ||||||  ||||| ||||||||| ||||||   || |||||| |||||||||| | |||| ||||||||||||||||||    
T  301362 aacaacttcatcttctttctctcatac--cttttggttcagtcacgttagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaat 301459  T
Q  255 cttcgatataatttctataaggattcttgccctgaagctga 295  Q
    |||| |||||||||||||| ||||||| ||||| |||||||    
T  301460 cttcaatataatttctatagggattctagccctcaagctga 301500  T

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