View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17683_high_9 (Length: 305)
Name: NF17683_high_9
Description: NF17683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17683_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 32 - 287
Target Start/End: Complemental strand, 40959955 - 40959704
Alignment:
| Q |
32 |
taaataagtctccttaggacacacattagcaataccataaaagtaaattagaagtttgacattaatattgcagaaaattgaaatgaaattttcaatatta |
131 |
Q |
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| T |
40959955 |
taaataagtctccttaggacacacattagcaataccataaaagtaaattagaagtttgacattaatattgcagaaaatttaaatgaaattttcaatatta |
40959856 |
T |
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| Q |
132 |
attaaaggcatgaaaaacctaatgatttttgatacacttgtataaaatacaacaaataaagcatcttcaaaagtaaccaacaaagttaacaaataggaag |
231 |
Q |
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| T |
40959855 |
attaaaggcatgaaaaacctaatgattattgttacacttgtataga----tacaaataaaacattttcagaattaaccaacaaagttaacaaattggaag |
40959760 |
T |
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| Q |
232 |
aggagcaccgttccactctcccaaacattcaagaagaggatcgatgatttttccct |
287 |
Q |
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| T |
40959759 |
aggagcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccct |
40959704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 133 - 287
Target Start/End: Complemental strand, 40945894 - 40945739
Alignment:
| Q |
133 |
ttaaaggcatgaaaaaccta-atgatttttgatacacttgtataaaatacaacaaataaagcatcttcaaaagtaaccaacaaagttaacaaataggaag |
231 |
Q |
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| T |
40945894 |
ttaaaggcttgaaaaacctacatgatttttgatacacttgtataaaatacaacaaataaagcattttcataattaaccaacaaagttaacaaattggaag |
40945795 |
T |
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| Q |
232 |
aggagcaccgttccactctcccaaacattcaagaagaggatcgatgatttttccct |
287 |
Q |
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| T |
40945794 |
aggagcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccct |
40945739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 28183610 - 28183666
Alignment:
| Q |
217 |
ttaacaaataggaagaggagcaccgttccactctcccaaacattcaagaagaggatc |
273 |
Q |
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| T |
28183610 |
ttaacaaattggaagaggagcgccgttccactctccgagacattccataagaggatc |
28183666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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