View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17683_low_10 (Length: 301)

Name: NF17683_low_10
Description: NF17683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17683_low_10
NF17683_low_10
[»] chr3 (39 HSPs)
chr3 (106-248)||(13853238-13853392)
chr3 (105-217)||(10361609-10361733)
chr3 (86-160)||(10262819-10262893)
chr3 (15-93)||(7758392-7758470)
chr3 (181-248)||(10502808-10502874)
chr3 (16-59)||(47609721-47609764)
chr3 (86-172)||(10090912-10090998)
chr3 (90-172)||(10431906-10431988)
chr3 (16-94)||(51469961-51470039)
chr3 (84-172)||(9840974-9841062)
chr3 (16-85)||(47614183-47614252)
chr3 (15-83)||(534499-534567)
chr3 (171-226)||(10665681-10665736)
chr3 (16-59)||(47610614-47610657)
chr3 (15-91)||(49216239-49216315)
chr3 (15-83)||(54540823-54540891)
chr3 (86-172)||(10197794-10197880)
chr3 (247-289)||(13845622-13845666)
chr3 (35-92)||(535835-535892)
chr3 (16-56)||(5029717-5029757)
chr3 (23-59)||(7268868-7268904)
chr3 (84-164)||(10129041-10129121)
chr3 (15-59)||(12700197-12700241)
chr3 (112-171)||(10582755-10582814)
chr3 (15-83)||(29932732-29932799)
chr3 (15-83)||(29981886-29981953)
chr3 (16-59)||(51470489-51470532)
chr3 (15-83)||(54539755-54539823)
chr3 (16-83)||(5001200-5001267)
chr3 (186-232)||(10034233-10034279)
chr3 (183-233)||(10091021-10091071)
chr3 (183-233)||(10197903-10197953)
chr3 (22-59)||(7267667-7267704)
chr3 (91-164)||(10502706-10502779)
chr3 (84-173)||(10519601-10519690)
chr3 (22-59)||(34019185-34019222)
chr3 (25-83)||(47615591-47615649)
chr3 (84-160)||(9851855-9851931)
chr3 (15-59)||(55192028-55192072)
[»] chr6 (15 HSPs)
chr6 (16-85)||(8822827-8822896)
chr6 (16-83)||(3721612-3721679)
chr6 (16-88)||(3722541-3722613)
chr6 (15-83)||(16704530-16704598)
chr6 (16-83)||(8659265-8659332)
chr6 (16-83)||(8660238-8660304)
chr6 (16-83)||(8821873-8821940)
chr6 (16-89)||(7314874-7314946)
chr6 (16-59)||(34834613-34834656)
chr6 (23-89)||(1829644-1829710)
chr6 (26-83)||(7316338-7316395)
chr6 (15-59)||(26574643-26574687)
chr6 (15-59)||(26575087-26575131)
chr6 (16-56)||(27318341-27318381)
chr6 (16-56)||(27322102-27322142)
[»] chr7 (21 HSPs)
chr7 (16-87)||(17781657-17781728)
chr7 (16-83)||(3227628-3227695)
chr7 (16-83)||(17782587-17782654)
chr7 (16-59)||(128635-128678)
chr7 (15-87)||(18371420-18371492)
chr7 (16-59)||(47524549-47524592)
chr7 (16-83)||(7501886-7501953)
chr7 (15-89)||(31659616-31659691)
chr7 (16-83)||(31949322-31949389)
chr7 (16-95)||(47525401-47525480)
chr7 (16-59)||(127360-127403)
chr7 (16-55)||(3227135-3227174)
chr7 (15-83)||(22630485-22630553)
chr7 (16-59)||(31949836-31949879)
chr7 (15-87)||(48934936-48935008)
chr7 (17-55)||(769441-769479)
chr7 (15-55)||(18372490-18372530)
chr7 (15-55)||(22629514-22629554)
chr7 (16-56)||(34174017-34174057)
chr7 (15-59)||(42886319-42886363)
chr7 (15-59)||(47369805-47369849)
[»] chr1 (14 HSPs)
chr1 (15-90)||(24422793-24422868)
chr1 (16-83)||(52827347-52827414)
chr1 (15-83)||(52274968-52275036)
chr1 (15-59)||(14999308-14999352)
chr1 (23-87)||(45148577-45148641)
chr1 (16-88)||(41364824-41364895)
chr1 (22-89)||(39699807-39699873)
chr1 (23-59)||(7675500-7675536)
chr1 (15-59)||(24426108-24426152)
chr1 (15-59)||(43058809-43058853)
chr1 (23-83)||(35594217-35594276)
chr1 (35-89)||(11437252-11437306)
chr1 (23-59)||(39222514-39222550)
chr1 (16-89)||(52828104-52828177)
[»] chr4 (20 HSPs)
chr4 (16-85)||(10471422-10471491)
chr4 (15-59)||(26421655-26421699)
chr4 (16-59)||(5525383-5525426)
chr4 (16-84)||(25684933-25685001)
chr4 (15-87)||(31601018-31601090)
chr4 (16-83)||(25685856-25685923)
chr4 (16-83)||(48780248-48780315)
chr4 (17-83)||(10470546-10470612)
chr4 (23-83)||(1835143-1835203)
chr4 (16-59)||(13386566-13386609)
chr4 (15-59)||(31599813-31599857)
chr4 (15-59)||(49308060-49308104)
chr4 (15-83)||(1963196-1963264)
chr4 (16-59)||(5526160-5526203)
chr4 (16-83)||(13386014-13386082)
chr4 (27-89)||(1834113-1834175)
chr4 (22-59)||(8758877-8758914)
chr4 (15-59)||(12129647-12129691)
chr4 (15-59)||(19750608-19750652)
chr4 (15-59)||(19789154-19789198)
[»] chr5 (20 HSPs)
chr5 (16-59)||(5777923-5777966)
chr5 (15-89)||(28538670-28538744)
chr5 (23-84)||(25056422-25056483)
chr5 (16-59)||(5730466-5730509)
chr5 (17-85)||(22940657-22940725)
chr5 (16-83)||(5778870-5778937)
chr5 (15-59)||(19752935-19752979)
chr5 (15-59)||(33158122-33158166)
chr5 (15-59)||(36486521-36486565)
chr5 (23-83)||(16650896-16650956)
chr5 (15-83)||(25523069-25523137)
chr5 (16-83)||(18485138-18485205)
chr5 (15-85)||(1796052-1796122)
chr5 (15-59)||(2686434-2686478)
chr5 (15-59)||(7311614-7311658)
chr5 (15-59)||(18154518-18154561)
chr5 (23-59)||(18486943-18486979)
chr5 (15-59)||(19754163-19754207)
chr5 (15-59)||(28539853-28539897)
chr5 (15-59)||(36485324-36485368)
[»] chr8 (15 HSPs)
chr8 (16-85)||(10006342-10006411)
chr8 (23-83)||(22221405-22221465)
chr8 (23-83)||(22227747-22227807)
chr8 (15-59)||(12351945-12351989)
chr8 (23-83)||(10007804-10007864)
chr8 (17-59)||(24123933-24123975)
chr8 (22-59)||(12353400-12353437)
chr8 (15-59)||(1823576-1823620)
chr8 (15-59)||(1824111-1824155)
chr8 (15-59)||(1858021-1858065)
chr8 (15-59)||(1858556-1858600)
chr8 (15-59)||(5514005-5514049)
chr8 (15-59)||(24122906-24122950)
chr8 (15-59)||(29968370-29968414)
chr8 (15-59)||(32207358-32207402)
[»] chr2 (14 HSPs)
chr2 (186-233)||(26909118-26909165)
chr2 (15-83)||(36449778-36449846)
chr2 (17-88)||(11938823-11938894)
chr2 (15-94)||(18906020-18906099)
chr2 (15-59)||(11258844-11258888)
chr2 (23-88)||(18299368-18299433)
chr2 (15-59)||(18300757-18300801)
chr2 (15-59)||(18868948-18868992)
chr2 (22-94)||(7899922-7899994)
chr2 (15-95)||(16446142-16446222)
chr2 (15-83)||(38840526-38840594)
chr2 (16-83)||(1034503-1034570)
chr2 (23-59)||(7898715-7898751)
chr2 (23-59)||(18797271-18797307)
[»] scaffold0186 (1 HSPs)
scaffold0186 (16-88)||(23076-23146)
[»] scaffold0019 (1 HSPs)
scaffold0019 (27-89)||(60084-60146)
[»] scaffold0302 (1 HSPs)
scaffold0302 (15-83)||(17470-17538)
[»] scaffold0294 (1 HSPs)
scaffold0294 (15-83)||(5471-5539)
[»] scaffold0045 (1 HSPs)
scaffold0045 (23-86)||(49125-49188)
[»] scaffold0093 (2 HSPs)
scaffold0093 (16-59)||(2499-2543)
scaffold0093 (16-59)||(7122-7166)
[»] scaffold0083 (1 HSPs)
scaffold0083 (92-164)||(55475-55547)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 13853392 - 13853238
Alignment:
Q  106 tgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaacatgcagtgatt------------atgctgtcatctatgccaaaa 193  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||            |||||||||||||||||||||    
T  13853392 tgatggaaggacccaattgtcatttcttgggagcgattctccttgcacgatgcaacatgcagtgattgaaaagtgtgttatgctgtcatctatgccaaaa 13853293  T
Q  194 ttgattttgagaagcacttttcttcaacacttgaaactctctgatattccatctc 248  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13853292 ttgattttgagaagcacttttcttcaacacttgaaactctatgatattccatctc 13853238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 10361733 - 10361609
Alignment:
Q  105 ttgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaacatgcagtgat------------tatgctgtcatctatgccaaa 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||            ||||||||||||| |||||||    
T  10361733 ttgatggaaggacccaattgtcatttcttgggagcgattctccatgtatgatgcaacatgcagtgattcaaaagtgcgctatgctgtcatctgtgccaaa 10361634  T
Q  193 attgattttgagaagcacttttctt 217  Q
    ||||||| |||||||||||| ||||    
T  10361633 attgattctgagaagcacttgtctt 10361609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 10262819 - 10262893
Alignment:
Q  86 aaaattaatatcaatggagttgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaa 160  Q
    |||||||||||| ||||  ||||||||||||||||||||||||| |||| ||| |||||||| |||| |||||||    
T  10262819 aaaattaatatcgatgggcttgatggaaggacccaattgtcattgcttgagagtgattctccgtgtatgatgcaa 10262893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 7758470 - 7758392
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaattaa 93  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||| ||| |||||    
T  7758470 agtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggggaaaaagtgcactttagcctaaatattaa 7758392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 10502808 - 10502874
Alignment:
Q  181 atctatgccaaaattgattttgagaagcacttttcttcaacacttgaaactctctgatattccatctc 248  Q
    |||||| |||||| |||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  10502808 atctattccaaaaatgattt-gagaagcacttgtcttcaacacttggaactctatgatattccatctc 10502874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 47609764 - 47609721
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  47609764 gttttggtacttagggggtcaaaattgcaagtttttgaaagtta 47609721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 10090912 - 10090998
Alignment:
Q  86 aaaattaatatcaatggagttgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaacatgcagtgatt 172  Q
    |||||||||||| ||||  ||| || |||||||||||||||||| |||| ||| ||||||||||||| |||| || ||| |||||||    
T  10090912 aaaattaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccatgtatgatggaagatgtagtgatt 10090998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 10431988 - 10431906
Alignment:
Q  90 ttaatatcaatggagttgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaacatgcagtgatt 172  Q
    |||||||||||||  |||| ||||||||| | |||||||| |||| ||| |||||||| |||| ||||||||||| |||||||    
T  10431988 ttaatatcaatgggcttgacggaaggaccaatttgtcattgcttgagagtgattctccgtgtatgatgcaacatgtagtgatt 10431906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 51470039 - 51469961
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaattaat 94  Q
    ||||||||||||||| || ||||||||||||||||||||| |||       ||||||||||||||||||| | ||||||    
T  51470039 gttttggtacttagggggccaaaattgcaagtttttgaaaattagggagggaaaagtgcactttagccaatatattaat 51469961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 9840974 - 9841062
Alignment:
Q  84 aaaaaattaatatcaatggagttgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaacatgcagtgatt 172  Q
    ||||||| |||||||||||  ||| || |||  ||||||||||||| |||| ||| ||||||||||||| ||||||| ||| |||||||    
T  9840974 aaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccatgtatgatgcaagatgtagtgatt 9841062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 47614252 - 47614183
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaa 85  Q
    |||||| |||||||| || |||||||||||||||||||||||||       |||||||||||||||||||    
T  47614252 gttttgatacttagggggccaaaattgcaagtttttgaaagttagaggggaaaaagtgcactttagccaa 47614183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 534567 - 534499
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| |||| ||||||||||||||||||||||||||| |||||       |||||||||||||||||    
T  534567 agtttttgtacataggaggtcaaaattgcaagtttttgagagttagaggggaaaaagtgcactttagcc 534499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 10665681 - 10665736
Alignment:
Q  171 ttatgctgtcatctatgccaaaattgattttgagaagcacttttcttcaacacttg 226  Q
    ||||||||||||| ||||||||||||||| |||||||||||| ||||  |||||||    
T  10665681 ttatgctgtcatccatgccaaaattgattatgagaagcacttgtcttacacacttg 10665736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 47610614 - 47610657
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||||||||| || |||||||||||||||||||||||||    
T  47610614 gttttggtacttagggggccaaaattgcaagtttttgaaagtta 47610657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 49216315 - 49216239
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaatt 91  Q
    |||||| |||| |||| |||||||||||||| ||||||||| |||       |||||||||||||||||||||||||    
T  49216315 agtttttgtacatagggggtcaaaattgcaactttttgaaacttaggcgtggaaaagtgcactttagccaaaaaatt 49216239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 54540823 - 54540891
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||       |||||||||||||||||    
T  54540823 agtttttgtacttaaggggtcaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 54540891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 10197794 - 10197880
Alignment:
Q  86 aaaattaatatcaatggagttgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaacatgcagtgatt 172  Q
    |||||||||||| ||||  ||| || |||||||||||||||||| |||| ||| |||||||| |||| |||| || ||| |||||||    
T  10197794 aaaattaatatcgatgggtttggtgaaaggacccaattgtcattgcttgagagtgattctccgtgtatgatggaagatgtagtgatt 10197880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 13845666 - 13845622
Alignment:
Q  247 tcagcccgcttgttgaattgaagac--aagtggggaatgttattc 289  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  13845666 tcagcccgcttgttgaattgaagacaaaagtggggaatgttattc 13845622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 535835 - 535892
Alignment:
Q  35 caaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaatta 92  Q
    |||||||||||||||||||||||||       |||||| |||||||||||||||||||    
T  535835 caaaattgcaagtttttgaaagttaggggtggaaaagtacactttagccaaaaaatta 535892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 5029717 - 5029757
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaag 56  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  5029717 gttttggtacttaggaggccaaaattgcaagattttgaaag 5029757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 7268868 - 7268904
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7268868 tacttaggaggccaaaattgcaagtttttgaaagtta 7268904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 10129041 - 10129121
Alignment:
Q  84 aaaaaattaatatcaatggagttgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaacatg 164  Q
    ||||||| |||||||||||  ||| || |||  ||||||||||||| |||| ||| |||||||| |||| |||||||||||    
T  10129041 aaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaacatg 10129121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 12700241 - 12700197
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| || |||||||||||||||||||||||||    
T  12700241 agtttttgtacttagggggccaaaattgcaagtttttgaaagtta 12700197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 10582755 - 10582814
Alignment:
Q  112 aaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaacatgcagtgat 171  Q
    |||||||||||||| ||| |||| ||| |||||||| |||| ||||||| ||||||||||    
T  10582755 aaggacccaattgttattgcttgagagtgattctccgtgtatgatgcaagatgcagtgat 10582814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 29932732 - 29932799
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||||||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  29932732 agtttttgtacttagg-ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 29932799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 29981886 - 29981953
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||||||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  29981886 agtttttgtacttagg-ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 29981953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 51470489 - 51470532
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||||||||| | || |||||||||||||||||||||||    
T  51470489 gttttggtacttaggggatctaaattgcaagtttttgaaagtta 51470532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 54539823 - 54539755
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||| ||||| ||| ||||||||||||||||||||||||       |||||||||||||||||    
T  54539823 agtttttgtatttagggggttaaaattgcaagtttttgaaagttaagggtggaaaagtgcactttagcc 54539755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 5001267 - 5001200
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| || |||||||||||| ||||||||| ||       |||||||||||||||||    
T  5001267 gttttggtacttagggggccaaaattgcaagattttgaaagataggggaggaaaagtgcactttagcc 5001200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 10034233 - 10034279
Alignment:
Q  186 tgccaaaattgattttgagaagcacttttcttcaacacttgaaactc 232  Q
    ||||||||||||||||||||||||||| ||||  ||||||| |||||    
T  10034233 tgccaaaattgattttgagaagcacttgtcttacacacttggaactc 10034279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 10091021 - 10091071
Alignment:
Q  183 ctatgccaaaattgattttgagaagcacttttcttcaacacttgaaactct 233  Q
    ||||||||||| |||||   |||||||||| ||||||||||||||||||||    
T  10091021 ctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactct 10091071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 10197903 - 10197953
Alignment:
Q  183 ctatgccaaaattgattttgagaagcacttttcttcaacacttgaaactct 233  Q
    ||||||||||| |||||   |||||||||| ||||||||||||||||||||    
T  10197903 ctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaaactct 10197953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 7267704 - 7267667
Alignment:
Q  22 gtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||| || |||||||||||||||||||||||||    
T  7267704 gtacttagggggccaaaattgcaagtttttgaaagtta 7267667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 10502706 - 10502779
Alignment:
Q  91 taatatcaatggagttgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaacatg 164  Q
    ||||||||||||  ||| || || ||| ||||| ||||| |||||||| || |||||||||| |||||||||||    
T  10502706 taatatcaatgggcttggtgaaaagactcaattatcattgcttgggagtgactctccatgtatgatgcaacatg 10502779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 10519601 - 10519690
Alignment:
Q  84 aaaaaattaatatcaatggagttgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaacatgcagtgatta 173  Q
    ||||||| |||||||||||  ||| || |||  ||||||||||||| |||| ||| |||||||| |||| ||||||| ||| || |||||    
T  10519601 aaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccttgtatgatgcaagatgtagagatta 10519690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 34019185 - 34019222
Alignment:
Q  22 gtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  34019185 gtacctagggggtcaaaattgcaagtttttgaaagtta 34019222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 47615591 - 47615649
Alignment:
Q  25 cttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  47615591 cttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 47615649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 9851855 - 9851931
Alignment:
Q  84 aaaaaattaatatcaatggagttgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaa 160  Q
    ||||||| |||||||||||  ||| || |||  ||||||||||||| |||| ||| |||||||| |||| |||||||    
T  9851855 aaaaaatgaatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaa 9851931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 55192028 - 55192072
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||  || |||||||||||||||||||||||||    
T  55192028 agtttttgtacttagagggccaaaattgcaagtttttgaaagtta 55192072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 8822827 - 8822896
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaa 85  Q
    ||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||    
T  8822827 gttttggtacttagggggtcaaaattgcaagtttttgaaagttaaagagggaaaagtgcactttagccaa 8822896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 3721679 - 3721612
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||    
T  3721679 gttttggtacttagggggtcaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 3721612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 3722541 - 3722613
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaa 88  Q
    ||||||||||||||  ||||||||||||||||||||||||||||       ||||||||||||||||| ||||    
T  3722541 gttttggtacttagagggtcaaaattgcaagtttttgaaagttagggagggaaaagtgcactttagcctaaaa 3722613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 16704530 - 16704598
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||    
T  16704530 agtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggaggaaaagtgcactttagcc 16704598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 8659332 - 8659265
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  8659332 gttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 8659265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 8660238 - 8660304
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||    
T  8660238 gttttggtacttagg-ggtcaaaattgcaagtttttgaaagttaggaggggaaaagtgcactttagcc 8660304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 8821940 - 8821873
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  8821940 gttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 8821873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 7314946 - 7314874
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaa 89  Q
    |||||| |||||||| || |||||||||||||||||||||||||       |||||||||||||||||||||||    
T  7314946 gttttgatacttagg-ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagccaaaaaa 7314874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 34834613 - 34834656
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| |||||||||| ||||||||||||||||||||||||||    
T  34834613 gttttgatacttaggagatcaaaattgcaagtttttgaaagtta 34834656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 1829644 - 1829710
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaa 89  Q
    |||||||| |||||||||||||||||||| |||||||       |||||||||||||| ||||||||    
T  1829644 tacttagggggtcaaaattgcaagtttttaaaagttagggggaaaaaagtgcactttaaccaaaaaa 1829710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 7316338 - 7316395
Alignment:
Q  26 ttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  7316338 ttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 7316395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 26574687 - 26574643
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||  | ||||||||||||||||||||||||||    
T  26574687 agtttttgtacttagaggttcaaaattgcaagtttttgaaagtta 26574643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 26575087 - 26575131
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||| | ||| ||||||||||||||||||||||||    
T  26575087 agtttttgtacttaaggggttaaaattgcaagtttttgaaagtta 26575131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 27318381 - 27318341
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaag 56  Q
    ||||||||||||||| || |||||||||||| |||||||||    
T  27318381 gttttggtacttagggggccaaaattgcaagattttgaaag 27318341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 27322102 - 27322142
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaag 56  Q
    ||||||||||||||| || |||||||||||| |||||||||    
T  27322102 gttttggtacttagggggccaaaattgcaagattttgaaag 27322142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 17781728 - 17781657
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaa 87  Q
    ||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||| |||||    
T  17781728 gttttggtacttagggggtcaaaattgcaagtttttgaaagttagggggggaaaagtgcactttagtcaaaa 17781657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 3227628 - 3227695
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  3227628 gttttggtacttagggggccaaaattgcaagtttttgaaagttagggggggaaaagtgcactttagcc 3227695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 17782587 - 17782654
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  17782587 gttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 17782654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 128635 - 128678
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||||||||| |||||||||||||| |||||||||||||    
T  128635 gttttggtacttagggggtcaaaattgcaaatttttgaaagtta 128678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 18371492 - 18371420
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaa 87  Q
    |||||| ||||||| | || |||||||||||||||||||||||||       |||||||||||||||||||||    
T  18371492 agtttttgtacttaaggggccaaaattgcaagtttttgaaagttaggaggggaaaagtgcactttagccaaaa 18371420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 47524592 - 47524549
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||||||||| || |||||||||||||||||||||||||    
T  47524592 gttttggtacttagggggccaaaattgcaagtttttgaaagtta 47524549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 7501886 - 7501953
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| |||||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  7501886 gttttgatacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 7501953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 31659691 - 31659616
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta-nnnnnnnaaaagtgcactttagccaaaaaa 89  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||        |||||||||||||||||||||||    
T  31659691 agtttttgtacttagggggtcaaaattgtaagtttttgaaagttagggggggtaaaagtgcactttagccaaaaaa 31659616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 31949389 - 31949322
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| || ||||||||||||||||||||| |||       |||||||||||||||||    
T  31949389 gttttggtacttagggggccaaaattgcaagtttttgaaaattagggagggaaaagtgcactttagcc 31949322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 47525401 - 47525480
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaattaata 95  Q
    |||||| |||||||| ||  ||||||||||||||||||||||||       |||||||||||||||||||| | ||||||    
T  47525401 gttttgatacttagggggctaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagccaaagatttaata 47525480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 127403 - 127360
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||||||||| |  |||||||||||||||||||||||||    
T  127403 gttttggtacttaggggaccaaaattgcaagtttttgaaagtta 127360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 3227174 - 3227135
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaa 55  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  3227174 gttttggtacttagggggccaaaattgcaagtttttgaaa 3227135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 22630485 - 22630553
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||| ||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  22630485 agtttttgtaattagggggccaaaattgcaagtttttgaaagttatggagggaaaagtgcactttagcc 22630553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 31949836 - 31949879
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||| ||||| || |||||||||||||||||||||||||    
T  31949836 gttttggtatttagggggccaaaattgcaagtttttgaaagtta 31949879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 48934936 - 48935008
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaa 87  Q
    |||||| ||||||||  |||||||||| |||||||||||||||||       |||| ||||||||||||||||    
T  48934936 agtttttgtacttagagggtcaaaattacaagtttttgaaagttaggggtggaaaaatgcactttagccaaaa 48935008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 769479 - 769441
Alignment:
Q  17 ttttggtacttaggaggtcaaaattgcaagtttttgaaa 55  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  769479 tttttgtacttaggatgtcaaaattgcaagtttttgaaa 769441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 18372490 - 18372530
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaa 55  Q
    |||||| ||||||||| || |||||||||||||||||||||    
T  18372490 agtttttgtacttagggggccaaaattgcaagtttttgaaa 18372530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 22629554 - 22629514
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaa 55  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  22629554 agtttttgtacttaggaggccaaaattacaagtttttgaaa 22629514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 34174017 - 34174057
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaag 56  Q
    ||||||||||||||| || |||||||||||| |||||||||    
T  34174017 gttttggtacttagggggccaaaattgcaagattttgaaag 34174057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 42886319 - 42886363
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||| ||||| |||||||||||||| |||||||||||||    
T  42886319 agtttttgtatttagggggtcaaaattgcaaatttttgaaagtta 42886363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 47369849 - 47369805
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||| ||||  ||||||||||||||||||||||||    
T  47369849 agtttttgtacttatgaggctaaaattgcaagtttttgaaagtta 47369805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 24422868 - 24422793
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaat 90  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||| ||||||    
T  24422868 agtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggggtaaaagtgcactttagcctaaaaat 24422793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 52827414 - 52827347
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||    
T  52827414 gttttggtacttagggggtcaaaattgcaagtttttgaaagttagggggggaaaagtgcactttagcc 52827347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 52275036 - 52274968
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||    
T  52275036 agtttttgtacttagggggtcaaaattgcaagtttttgaaagttaggggggtaaaagtgcactttagcc 52274968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 14999352 - 14999308
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  14999352 agtttttgtacttagggggtcaaaattgcaagtttttgaaagtta 14999308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 45148641 - 45148577
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaa 87  Q
    |||||||| || |||||||||||||||||||||||||       |||||||||||||||||||||    
T  45148641 tacttagggggccaaaattgcaagtttttgaaagttaagcgggaaaaagtgcactttagccaaaa 45148577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 41364895 - 41364824
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaa 88  Q
    ||||||||| ||||| || |||||||||||||||||||||||||       ||||||||||||||||||||||    
T  41364895 gttttggtatttagggggccaaaattgcaagtttttgaaagtta-ggggagaaaagtgcactttagccaaaaa 41364824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 39699807 - 39699873
Alignment:
Q  22 gtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaa 89  Q
    ||||||||| ||||||||||||||||| ||||||||||       |||||||||||||||||||||||    
T  39699807 gtacttagggggtcaaaattgcaagttattgaaagtta-ggggggaaaagtgcactttagccaaaaaa 39699873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 7675500 - 7675536
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7675500 tacttaggagggcaaaattgcaagtttttgaaagtta 7675536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 24426108 - 24426152
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| || |||||||||||||||||||||||||    
T  24426108 agtttttgtacttagggggccaaaattgcaagtttttgaaagtta 24426152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 43058853 - 43058809
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||    
T  43058853 agtttttgtacttagggggtcaaaattgcaagtttttcaaagtta 43058809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 35594276 - 35594217
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||||| ||||||||||||||||||||||||||||       |||||||||||||||||    
T  35594276 tacttagg-ggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 35594217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 11437252 - 11437306
Alignment:
Q  35 caaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaa 89  Q
    |||||||||||||||||||||||||       ||||||||||||||||| |||||    
T  11437252 caaaattgcaagtttttgaaagttaagggggaaaaagtgcactttagcctaaaaa 11437306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 39222514 - 39222550
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||||| || |||||||||||||||||||||||||    
T  39222514 tacttagggggccaaaattgcaagtttttgaaagtta 39222550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 52828104 - 52828177
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaa 89  Q
    |||||||||||||||  | ||||||||||||||||||||| |||       |||||||||||||| || |||||    
T  52828104 gttttggtacttagggagccaaaattgcaagtttttgaaaattagagggggaaaagtgcactttaacctaaaaa 52828177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 10471422 - 10471491
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaa 85  Q
    ||||||||||||||| || |||||||||||||||||||||||||       |||||||||||||||||||    
T  10471422 gttttggtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagccaa 10471491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 26421655 - 26421699
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  26421655 agtttttgtacttaggaggtcaaaattgcaagtttttgaaagtta 26421699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5525426 - 5525383
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  5525426 gttttggtacttagggggtcaaaattgcaagtttttgaaagtta 5525383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 25685001 - 25684933
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcca 84  Q
    ||||||||||||||  ||||||||||||||||||||||||||||       ||||||||||||||||||    
T  25685001 gttttggtacttagagggtcaaaattgcaagtttttgaaagttagggggggaaaagtgcactttagcca 25684933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 31601018 - 31601090
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaa 87  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||       |||||||||||||||||||||    
T  31601018 agtttttgtacttagggggtcaaaattgcaagtttttaaaagttagaggggaaaaagtgcactttagccaaaa 31601090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 25685856 - 25685923
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  25685856 gttttggtacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 25685923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 48780315 - 48780248
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| |||||||||||||||||||| |||||||       |||||||||||||||||    
T  48780315 gttttggtacttagggggtcaaaattgcaagtttttaaaagttagggggggaaaagtgcactttagcc 48780248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 10470612 - 10470546
Alignment:
Q  17 ttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||||||||||  ||||||||||||||||||||||||||||       |||||||||||||||||    
T  10470612 ttttggtacttagagggtcaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 10470546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 1835143 - 1835203
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||||| ||||||||||||||||||||||||||||       |||||||||||||||||    
T  1835143 tacttagggggtcaaaattgcaagtttttgaaagttagggatggaaaagtgcactttagcc 1835203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 13386566 - 13386609
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||||||| | ||||||||||||||||||||||||||||    
T  13386566 gttttggtacttatggggtcaaaattgcaagtttttgaaagtta 13386609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 31599857 - 31599813
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||    
T  31599857 agtttttgtacttagggggtcaaaattgcaagtttttaaaagtta 31599813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 49308060 - 49308104
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| || |||||||||||||||||||||||||    
T  49308060 agtttttgtacttagggggccaaaattgcaagtttttgaaagtta 49308104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 1963264 - 1963196
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| |||| ||||||| ||||||||||| |||||||||||||       |||||||||||||||||    
T  1963264 agtttttgtacataggaggccaaaattgcaactttttgaaagttaaggggggaaaagtgcactttagcc 1963196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 5526160 - 5526203
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| |||||||| || |||||||||||||||||||||||||    
T  5526160 gttttgttacttagggggccaaaattgcaagtttttgaaagtta 5526203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 13386082 - 13386014
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagt-ttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||       |||||||||||||||||    
T  13386082 gttttggtacttagggggccaaaattgcaagttttttgaaagttagagggggaaaagtgcactttagcc 13386014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 1834175 - 1834113
Alignment:
Q  27 taggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaa 89  Q
    |||| ||||||||||| |||||||| |||||||       |||||||||||||||||||||||    
T  1834175 tagggggtcaaaattgtaagttttttaaagttagagggggaaaagtgcactttagccaaaaaa 1834113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 8758877 - 8758914
Alignment:
Q  22 gtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||| || |||||||||||||||||||||||||    
T  8758877 gtacttagggggccaaaattgcaagtttttgaaagtta 8758914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 12129691 - 12129647
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||| | || |||||||||||||||||||||||||    
T  12129691 agtttttgtacttacggggccaaaattgcaagtttttgaaagtta 12129647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 19750608 - 19750652
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| || ||||||||||||||||| |||||||    
T  19750608 agtttttgtacttagggggccaaaattgcaagtttttaaaagtta 19750652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 19789198 - 19789154
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| || ||||||||||||||||| |||||||    
T  19789198 agtttttgtacttagggggccaaaattgcaagtttttaaaagtta 19789154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5777966 - 5777923
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  5777966 gttttggtacttagggggtcaaaattgcaagtttttgaaagtta 5777923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 28538744 - 28538670
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaa 89  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||       ||||||||||||||||| |||||    
T  28538744 agtttttgtacttaaggggtcaaaattgcaagtttttgaaagttacgggtggaaaagtgcactttagcctaaaaa 28538670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 25056422 - 25056483
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcca 84  Q
    |||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||    
T  25056422 tacttagggggtcaaaattgcaagtttttgaaagttaggagtggaaaagtgcactttagcca 25056483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5730509 - 5730466
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||||||||||||| | |||||||||||||||||||||||||    
T  5730509 gttttggtacttaggaagccaaaattgcaagtttttgaaagtta 5730466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 22940657 - 22940725
Alignment:
Q  17 ttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaa 85  Q
    |||| ||||||||| || |||||||||||||||||||||||||       |||||||||||||||||||    
T  22940657 tttttgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagccaa 22940725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 5778870 - 5778937
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||       |||||||||||||||||    
T  5778870 gttttggtacttagggggcaaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 5778937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 19752979 - 19752935
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| || |||||||||||||||||||||||||    
T  19752979 agtttttgtacttagggggccaaaattgcaagtttttgaaagtta 19752935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 33158166 - 33158122
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| |||||||||  |||||||||||||||||||||||||||    
T  33158166 agtttttgtacttagggtgtcaaaattgcaagtttttgaaagtta 33158122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 36486521 - 36486565
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||    
T  36486521 agtttttgtacttagggggtcaaaattgcaagtttttaaaagtta 36486565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 16650896 - 16650956
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||||| |||||||||||||||||||| |||||||       |||||||||||||||||    
T  16650896 tacttagggggtcaaaattgcaagtttttaaaagttaagggtggaaaagtgcactttagcc 16650956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 25523137 - 25523069
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||||||||| ||  ||||||||||||||||||||||||       |||||||||||||||||    
T  25523137 agtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 25523069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 18485205 - 18485138
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| |||||||| || ||||||||||||||||| |||||||       |||||||||||||||||    
T  18485205 gttttgatacttagggggccaaaattgcaagttttttaaagttagaggggaaaaagtgcactttagcc 18485138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 1796122 - 1796052
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaa 85  Q
    |||||| ||||||||| || |||| ||||||||||||||||||||       |||| ||||||||||||||    
T  1796122 agtttttgtacttaggtggccaaagttgcaagtttttgaaagttaggggtggaaaaatgcactttagccaa 1796052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 2686434 - 2686478
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||| ||| |||||||||||||||||| |||||||    
T  2686434 agtttttgtacttaagagatcaaaattgcaagtttttaaaagtta 2686478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 7311658 - 7311614
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||    
T  7311658 agtttttgtacttgggaggccaatattgcaagtttttgaaagtta 7311614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 18154561 - 18154518
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||    
T  18154561 agtttttgtacttagg-ggtcaaaattgtaagtttttgaaagtta 18154518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 18486943 - 18486979
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||||| || |||||||||||||||||||||||||    
T  18486943 tacttagggggccaaaattgcaagtttttgaaagtta 18486979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 19754163 - 19754207
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||| ||||| || |||||||||||||||||||||||||    
T  19754163 agtttttgtatttagggggccaaaattgcaagtttttgaaagtta 19754207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 28539853 - 28539897
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||  |||||||||||||||||||| |||||||    
T  28539853 agtttttgtacttagagggtcaaaattgcaagtttttaaaagtta 28539897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 36485368 - 36485324
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||| ||||||||||||| |||||||| |||||||    
T  36485368 agtttttgtacttaagaggtcaaaattgtaagttttttaaagtta 36485324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 10006411 - 10006342
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaa 85  Q
    |||||| |||||||| || |||||||||||||||||||||||||       |||||||||||||||||||    
T  10006411 gttttgatacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagccaa 10006342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 22221405 - 22221465
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||||| ||||||||||||||||||||||||||||       |||||||||||||||||    
T  22221405 tacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 22221465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 22227747 - 22227807
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||||| ||||||||||||||||||||||||||||       |||||||||||||||||    
T  22227747 tacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 22227807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 12351989 - 12351945
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| |||||||||||||| |||||||||||||    
T  12351989 agtttttgtacttagggggtcaaaattgcaaatttttgaaagtta 12351945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 10007804 - 10007864
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  10007804 tacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 10007864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 24123933 - 24123975
Alignment:
Q  17 ttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||| ||||||| |||| |||||||||||||||||||||||||    
T  24123933 ttttagtacttaagaggccaaaattgcaagtttttgaaagtta 24123975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 12353400 - 12353437
Alignment:
Q  22 gtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    ||||||||| || |||||||||||||||||||||||||    
T  12353400 gtacttagggggccaaaattgcaagtttttgaaagtta 12353437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 1823620 - 1823576
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||  |||||||||||||||||||| |||||||    
T  1823620 agtttttgtacttagagggtcaaaattgcaagtttttaaaagtta 1823576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 1824111 - 1824155
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| |  |||||||||||||||||||||||||    
T  1824111 agtttttgtacttaggggaccaaaattgcaagtttttgaaagtta 1824155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 1858065 - 1858021
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||  |||||||||||||||||||| |||||||    
T  1858065 agtttttgtacttagagggtcaaaattgcaagtttttaaaagtta 1858021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 1858556 - 1858600
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| |  |||||||||||||||||||||||||    
T  1858556 agtttttgtacttaggggaccaaaattgcaagtttttgaaagtta 1858600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 5514049 - 5514005
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| || |||||||| ||||||||||||||||    
T  5514049 agtttttgtacttagggggccaaaattggaagtttttgaaagtta 5514005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 24122950 - 24122906
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| |||||||||||||| ||||| |||||||    
T  24122950 agtttttgtacttagggggtcaaaattgcaaattttttaaagtta 24122906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 29968370 - 29968414
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| || ||||||||||||||||| |||||||    
T  29968370 agtttttgtacttagggggccaaaattgcaagtttttaaaagtta 29968414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 32207358 - 32207402
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| |||||||||  |||||||||||||||||||||| ||||    
T  32207358 agtttttgtacttagggcgtcaaaattgcaagtttttgaaggtta 32207402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 26909118 - 26909165
Alignment:
Q  186 tgccaaaattgattttgagaagcacttttcttcaacacttgaaactct 233  Q
    |||||||||||||| |||||||||| | ||||||||||||||||||||    
T  26909118 tgccaaaattgattctgagaagcacatgtcttcaacacttgaaactct 26909165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 36449846 - 36449778
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||||||||| || |||||||||||||||||||||||||       |||||||||||||||||    
T  36449846 agtttttgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 36449778  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 11938823 - 11938894
Alignment:
Q  17 ttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaa 88  Q
    |||| |||||||||||  |||||||||||||||||||||||||       ||||||||||||||||| ||||    
T  11938823 tttttgtacttaggagaccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcctaaaa 11938894  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 18906020 - 18906099
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaattaat 94  Q
    |||||| ||||||||| ||  ||||||||||||||||||||||||       ||||||||||||||||| ||||| ||||    
T  18906020 agtttttgtacttagggggctaaaattgcaagtttttgaaagttagaaggggaaaagtgcactttagcctaaaaactaat 18906099  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 11258844 - 11258888
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| || |||||||||||||||||||||||||    
T  11258844 agtttttgtacttagggggccaaaattgcaagtttttgaaagtta 11258888  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 18299433 - 18299368
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaa 88  Q
    |||||||| || |||||||| ||||||||||||||||       ||||||||||||||||||||||    
T  18299433 tacttaggtggccaaaattgaaagtttttgaaagttacgggtggaaaagtgcactttagccaaaaa 18299368  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 18300757 - 18300801
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||    
T  18300757 agtttttgtacttagggggtcaaaattgcaagtttatgaaagtta 18300801  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 18868992 - 18868948
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| ||| |||||||| |||||||||||||||||||||||||    
T  18868992 agtttttgtatttaggaggccaaaattgcaagtttttgaaagtta 18868948  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 7899922 - 7899994
Alignment:
Q  22 gtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaattaat 94  Q
    ||||||||| |  |||||||||||||||||||||||||       ||||||||||||||||| ||||| ||||    
T  7899922 gtacttaggggaccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcctaaaaaataat 7899994  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 16446222 - 16446142
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaattaata 95  Q
    |||||| ||| ||| ||||| ||||||||||||||||||||||||       |||| |||||||||||| ||||| |||||    
T  16446222 agtttttgtatttatgaggttaaaattgcaagtttttgaaagttaagggtagaaaaatgcactttagcctaaaaaataata 16446142  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 38840526 - 38840594
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||||||||| ||  ||||||||||||||||||||||||       |||||||||||||||||    
T  38840526 agtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 38840594  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 1034503 - 1034570
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||||||| |||| || |||||||||| ||||||||||||||       |||||||||||||||||    
T  1034503 gttttggtacgtagggggccaaaattgcatgtttttgaaagttaaggggggaaaagtgcactttagcc 1034570  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 7898751 - 7898715
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||||||||  ||||||||||||||||||||||||    
T  7898751 tacttaggaggcaaaaattgcaagtttttgaaagtta 7898715  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 18797307 - 18797271
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagtta 59  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18797307 tacttaaggggtcaaaattgcaagtttttgaaagtta 18797271  T

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Target: scaffold0186 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 23146 - 23076
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaa 88  Q
    ||||||||||||||  || |||||||||||||||||||||||||       ||||||||||||||||||||||    
T  23146 gttttggtacttagagggacaaaattgcaagtttttgaaagtta--gggggaaaagtgcactttagccaaaaa 23076  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 60146 - 60084
Alignment:
Q  27 taggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaaaaa 89  Q
    |||| |||||||||||||||||||| |||||||       |||||||||||||||||||||||    
T  60146 tagggggtcaaaattgcaagtttttaaaagttagaggaggaaaagtgcactttagccaaaaaa 60084  T

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Target: scaffold0302 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 17538 - 17470
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||||||||| || ||||||||||||||||| |||||||       |||||||||||||||||    
T  17538 agtttttgtacttagggggccaaaattgcaagtttttaaaagttaagggggaaaaagtgcactttagcc 17470  T

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Target: scaffold0294 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 5471 - 5539
Alignment:
Q  15 agttttggtacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagcc 83  Q
    |||||| ||||||| | |||||||||||||||||||||||| |||       |||||||||||||||||    
T  5471 agtttttgtacttaaggggtcaaaattgcaagtttttgaaaattagggggggaaaagtgcactttagcc 5539  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 49125 - 49188
Alignment:
Q  23 tacttaggaggtcaaaattgcaagtttttgaaagttannnnnnnaaaagtgcactttagccaaa 86  Q
    ||||||||||| ||||||||||||||||| |||||||       ||||||||| ||||||||||    
T  49125 tacttaggaggccaaaattgcaagtttttaaaagttaagggtggaaaagtgcaatttagccaaa 49188  T

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Target: scaffold0093 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 2499 - 2543
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaag-tttttgaaagtta 59  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||||    
T  2499 gtttttgtacttagggggtcaaaattgcaagttttttgaaagtta 2543  T

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Target: scaffold0093; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 7122 - 7166
Alignment:
Q  16 gttttggtacttaggaggtcaaaattgcaag-tttttgaaagtta 59  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||||    
T  7122 gtttttgtacttagggggtcaaaattgcaagttttttgaaagtta 7166  T

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Target: scaffold0083 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 55547 - 55475
Alignment:
Q  92 aatatcaatggagttgatggaaggacccaattgtcatttcttgggagcgattctccatgtacgatgcaacatg 164  Q
    |||||||||||  ||| || |||  ||||||||||||| |||| ||| |||||||| |||| |||||||||||    
T  55547 aatatcaatgggcttggtgaaagttcccaattgtcattgcttgagagtgattctccgtgtatgatgcaacatg 55475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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