View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17683_low_13 (Length: 217)
Name: NF17683_low_13
Description: NF17683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17683_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 31898227 - 31898333
Alignment:
| Q |
9 |
gaaaagaatggtgagcggtgtctgatgctggtaaggctccttcattgctaaggcataaaatcctccagaggaagaaggatccgacaagtcaaagtgtgaa |
108 |
Q |
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| T |
31898227 |
gaaaagaatggtgagcggtgtctgatgctgataaggctccttcattgctaaggcataaaatcctccggaggaagaaggatccgacaagtcaaagtgtgaa |
31898326 |
T |
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| Q |
109 |
gtcacca |
115 |
Q |
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||||||| |
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| T |
31898327 |
gtcacca |
31898333 |
T |
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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 31930226 - 31930324
Alignment:
| Q |
15 |
aatggtgagcggtgtctgatgctggtaaggctccttcattgctaaggcataaaatcctccagaggaagaaggatccgacaagtcaaagtgtgaagtcac |
113 |
Q |
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||||||||||| ||| ||||| || ||||||||||| |||| || |||| |||||||||| |||||||||||||||||| |||| || |||| |||| |
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| T |
31930226 |
aatggtgagcgatgtatgatgttgataaggctcctttgttgccaacgcattcaatcctccagtggaagaaggatccgacaaatcaatgtatgaaatcac |
31930324 |
T |
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