View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17683_low_6 (Length: 344)
Name: NF17683_low_6
Description: NF17683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17683_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 40959963 - 40960211
Alignment:
| Q |
13 |
ggttaccatattatcgatatgaagttttcatacgcaagagtcagagatcgaacctctgattacttgtttatggggttcaaatatcttaccactttgatca |
112 |
Q |
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| T |
40959963 |
ggttaccatattatcgatatgaagttttcatatgcaagagtcagagatcgaacctctgattacttgcttatggggttcaaatatcttaccacttagatca |
40960062 |
T |
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| Q |
113 |
atctattgttggaaagtataatttttaaaaatttagtggtattgaagtcacttttcaaaacaatagtttcacatttaatttcttaaggcataatattaga |
212 |
Q |
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| T |
40960063 |
atctattgttggaaagtataattttt-taaatttagaggtattgaagtcacttttcaaaacaatagtttcacatttaatttcttaaggcataatattaga |
40960161 |
T |
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| Q |
213 |
attttcctacttttggaacatactttcatttattcgtcggagcctttagt |
262 |
Q |
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| T |
40960162 |
attttcctacttttggaacatactttcatttgttcgtcggagcctttagt |
40960211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 40960275 - 40960351
Alignment:
| Q |
262 |
tcccttgtgctaccattgatgtttctctgtttccgtaataagactt--tatagtcttcatcaggccggtccctttgc |
336 |
Q |
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| T |
40960275 |
tcccttgtgctaccattgatgtttctctgtttccgtaataagactttatatagtcttcatcaggccggtccctttgc |
40960351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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