View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17684_high_12 (Length: 309)

Name: NF17684_high_12
Description: NF17684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17684_high_12
NF17684_high_12
[»] chr5 (1 HSPs)
chr5 (20-309)||(39076163-39076443)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 39076443 - 39076163
Alignment:
Q  20 gacatcatcattgcattgtctaaacatttacttgcactaatttgtatttaattgactaagtatatgcagctcaacaattatgcgaagaaaacactgaatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076443 gacatcatcattgcattgtctaaacatttacttgcactaatttgtttttaattgactaagtatatgcagctcaacaattatgcgaagaaaacactgaatg 39076344  T
Q  120 aagacttatatagttaagcaattaatgtccatgcatttagcttgttaagacaaattcatatttgttcgtgcaatcgaaaaagctttttgttcaacctgca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076343 aagacttatatagttaagcaattaatgtccatgcatttagcttgttaagacaaattcatatttgttcgtgcaatcgaaaaagctttttgttcaacctgca 39076244  T
Q  220 cttgttttactttttcataaatgnnnnnnnnnnnnnnnnnnnctgcggctgcaattggtcttagataaatgatgaaattgaaaatgatgg 309  Q
    |||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076243 cttgttttactttttcataaatg---------caaaaaaaaactgcggctgcaattggtcttagataaatgatgaaattgaaaatgatgg 39076163  T

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