View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17684_high_14 (Length: 304)
Name: NF17684_high_14
Description: NF17684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17684_high_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 1516159 - 1516451
Alignment:
| Q |
12 |
atgaatctgaagttattgaaatggtcagtcaatgttttatctttctttgcatatcaataatccttctacttgtgtgtttatgtcatattacttgcttgca |
111 |
Q |
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| T |
1516159 |
atgaatctgaagttattgaaatggtcagtcaacgttttatctttctttgcatatcaataatccttctacttgtgtgtttatgtcatattacttgcttgca |
1516258 |
T |
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| Q |
112 |
aatagtggaatattaaattatattttttcgattacgtttcctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgc |
211 |
Q |
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| T |
1516259 |
aatagtggaatattaaattatattttttcgattacgtttcctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgc |
1516358 |
T |
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| Q |
212 |
agagtcagctatttccaattctcagcctgtgatttcattggctgctgacgatgatagtgaaacagattcagaagaagaaagtagcactgatga |
304 |
Q |
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| T |
1516359 |
agagtcagctatttccaattctcagcctgtgatttcattggctgctgacgatgatagtgaaacagattcagaagaagaaagtagcactgatga |
1516451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 152 - 293
Target Start/End: Complemental strand, 36613686 - 36613548
Alignment:
| Q |
152 |
ctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattg |
251 |
Q |
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| T |
36613686 |
ctggcaggatttgatgcttggtgttgctgatcttcatacaccagaggctgtggcagctgcagagtcagctgtttccagttgtcagcctgtgatttcattg |
36613587 |
T |
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| Q |
252 |
gctgctgacgatgatagtgaaacagattcagaagaagaaagt |
293 |
Q |
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| T |
36613586 |
gctgct---gatgatagtgaaatagattcagaagaagaaagt |
36613548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 36613808 - 36613768
Alignment:
| Q |
12 |
atgaatctgaagttattgaaatggtcagtcaatgttttatc |
52 |
Q |
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| T |
36613808 |
atgaatccgaagttattgaaatggttagtcaatgttctatc |
36613768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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