View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17685_high_1 (Length: 408)
Name: NF17685_high_1
Description: NF17685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17685_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 37019931 - 37020320
Alignment:
| Q |
1 |
gaccttgtagtgtgcaatttatattccttgctcaagaaaacagaaactacatttgaattatctgcaacaacatagaaacatatataaatagtgtcaattt |
100 |
Q |
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| T |
37019931 |
gaccttgtagtgtgcaatttatattccttgctcaagaaaacagaaactacatttgaattatctgcaccaacatagaaacatatataaatagtgtcaattt |
37020030 |
T |
|
| Q |
101 |
gtgtcttaaaaaatactcaacaaatccatggtnnnnnnngtaattattgcttacttgcaatctttgatgcctcttcatcttcaagcagtgcagcaaatcc |
200 |
Q |
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| T |
37020031 |
gtgtcttaaaaaatactcaacaaatccatggtaaaaaaagtaattattgcttacttgcaatctttgatgcctcttcatcttcaagcagtgcagcaaatcc |
37020130 |
T |
|
| Q |
201 |
atttatatgcttattgtaagagtacatcactgtttcctttgccttctcatggctgttataaaaacacaactattttagtactactcaacttctctagtgt |
300 |
Q |
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| T |
37020131 |
atttatatgcttattgtaagagtacatcactgtttcctttgccttctcatggctgttacaaaaacacaactattttagcactactcaacttctctagtgt |
37020230 |
T |
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| Q |
301 |
cttagaatatgtaatataaaattaatagactatgtaccttcctaagattgaagcaagtaaatcataatgtgaatttgtggccgagtcaag |
390 |
Q |
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| T |
37020231 |
cttagaatatgtaatataaaattaatagactatgtaccttcctaagattgaagcaagtaaatcataatgtgaatttgtggctgagtcaag |
37020320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 254
Target Start/End: Complemental strand, 24265663 - 24265559
Alignment:
| Q |
150 |
cttacttgcaatctttgatgcctcttcatcttcaagcagtgcagcaaatccatttatatgcttattgtaagagtacatcactgtttcctttgccttctca |
249 |
Q |
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|||||||||||| |||| ||| ||||| ||||||| | |||||||| ||||| || || |||||||| ||||| | | || |||||| ||||||||| |
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| T |
24265663 |
cttacttgcaatttttgctgcttcttctacttcaagtacagcagcaaaaccattgatgtgtttattgtatgagtaaaatattgcttccttagccttctca |
24265564 |
T |
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| Q |
250 |
tggct |
254 |
Q |
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||||| |
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| T |
24265563 |
tggct |
24265559 |
T |
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