View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17685_low_4 (Length: 209)
Name: NF17685_low_4
Description: NF17685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17685_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 43700646 - 43700477
Alignment:
| Q |
26 |
ttccatcaaataagactaatattaagctccttggtgatggttcaacccagacaatcattgtctatcaccaaaatggttccgtcgctactataggtatgct |
125 |
Q |
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| T |
43700646 |
ttccaccaaataagcctaatattaagctccttggtgatggttcaaaccagacaatcattgtttgtcaccaaaatggttccgtcggtaccataggtatgct |
43700547 |
T |
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| Q |
126 |
acctaattatttttattctcacttaacttccaattaattcattcattttctatatttgattcttaatttatttt |
199 |
Q |
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| T |
43700546 |
tcctaattattcttactctcacttaacttcc----aattcattcattttccatatttgattcttaatttatttt |
43700477 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 45519203 - 45519134
Alignment:
| Q |
36 |
taagactaatattaagctccttggtgatggttcaacccagacaatcattgtctatcaccaaaatggttcc |
105 |
Q |
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| T |
45519203 |
taagattaatattaagctcctaggtcatggttcaaaccacacaatacttgttgctcaccaaaatggttcc |
45519134 |
T |
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