View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17686_high_2 (Length: 381)
Name: NF17686_high_2
Description: NF17686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17686_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 33562630 - 33562973
Alignment:
| Q |
18 |
aagacattaggcatatatggatcatacttcttttatatattcaatattttacttaattataggcgatatcgaacttaaccattcacacttgaaatccaac |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
33562630 |
aagacattaggcatatatgaatcatacttcttttatatattcaatattttactcaatcataggcgatattgaacttaaccactcacacttgaaatccaac |
33562729 |
T |
|
| Q |
118 |
aacctctctctaaagtgtgagttacaatcttttatacttgatacaaacaccatgatctcacttccctaccaagtcgaactaggattctgaggttcacatc |
217 |
Q |
| |
|
||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| || ||||||||||||||| |
|
|
| T |
33562730 |
aacctttccctgaagtgtgagttataatcttttatacttgatacaaacaccatgatctcaatcccctatcaagtcgaactaagactctgaggttcacatc |
33562829 |
T |
|
| Q |
218 |
tcttatatatccaaatggtttactaatcaataggcaatgtgaaacttaatgactcatattttaatttggaaaatgctaaaaaagttattttcaattataa |
317 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33562830 |
tcttatatatccaaatgatttactcatcaatacgcaatgtgaaacttaatgactcatattttaatttggaaaatgctaaaaaagttattttcaattataa |
33562929 |
T |
|
| Q |
318 |
aggcacttattaggatttaaatatagtaataatattttggaatt |
361 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
33562930 |
aggcacttattaggattcaaatatagtaataatatcttggaatt |
33562973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University