View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17686_low_3 (Length: 337)
Name: NF17686_low_3
Description: NF17686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17686_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 23 - 322
Target Start/End: Original strand, 13722137 - 13722439
Alignment:
| Q |
23 |
acaagatggatttaatactttgaattgggcactcaagaaatggaaatctcatccaatttccattgttattctccatgttactcataacatttctaaggag |
122 |
Q |
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| T |
13722137 |
acaagatggatttaatactttgaattgggcactcaagaaatggaaatctcatccaatttccattgttattctccatgttactcataacatttctaaggag |
13722236 |
T |
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| Q |
123 |
tatgtttatacaccatgtaagtttggcttgtgcataagannnnnnnnn---ccttgtttattttgaaattcaattgagtttagcttagttttgtgattgt |
219 |
Q |
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| T |
13722237 |
tatgtttatacaccatgtaagtttggcttgtgcataagattttttttttttccttgtttattttgaaattcaattgagtttagtttagttttgtgattgt |
13722336 |
T |
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| Q |
220 |
gtatttgtgttgttgtagttgggaaacttccagcaagatctttgaatgatgagaaactagaagctttaaggaaagatgagaaagagagaatcaagaagtt |
319 |
Q |
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| T |
13722337 |
gtatttgtgttgttgtagttgggaaacttccagcaagatctttgaatgatgagaaactagaagctttaaggaaagatgagaaagagagaatcaagaagtt |
13722436 |
T |
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| Q |
320 |
gtt |
322 |
Q |
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| T |
13722437 |
gtt |
13722439 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 28600898 - 28600846
Alignment:
| Q |
26 |
agatggatttaatactttgaattgggcactcaagaaatggaaatctcatccaa |
78 |
Q |
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| T |
28600898 |
agatggatttcaaacattggattgggctctcaagaaatggaattctcatccaa |
28600846 |
T |
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