View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17686_low_4 (Length: 335)
Name: NF17686_low_4
Description: NF17686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17686_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 32945291 - 32944985
Alignment:
| Q |
8 |
aaatttgtttcataaagaagtgcaaataagaaatgagataatgcgatttgaacaataaagtcaatgtatgtctttctcttttattattgtggtgttaacg |
107 |
Q |
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| T |
32945291 |
aaatatgttttataaagaagtgcaaataataaatgagataatgcgatttgaacaataaagtcaatgtatgtctttctcttttattattgtggtgttaacg |
32945192 |
T |
|
| Q |
108 |
gttaaccctgacctgaccatttcgtaggagaagagtcatggtaatggtaatcacttaaagtaaatttaattatttgtttaacaaagctnnnnnnnnngtt |
207 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32945191 |
gttaaccct-----gaccatttcgtaggagaagagtcatggtaatggtaatcacttaaagtaaatttaattatttgtttaacaaagctaaaaaaaaagtt |
32945097 |
T |
|
| Q |
208 |
caaagcatgagacgtgttagtaattggatttttcttaagtgcagggtatgacataacattaatttgtatgtatgttcaaaacttcatatacacatatagt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32945096 |
caaagcatgagacgtgttagtaattggatttttcttaagtgcagggtatgacatagcattaatttgtatgtatgttcaaaacttcatatacacatatagt |
32944997 |
T |
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| Q |
308 |
tgaccagaatta |
319 |
Q |
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|||||||||||| |
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| T |
32944996 |
tgaccagaatta |
32944985 |
T |
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