View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17686_low_5 (Length: 289)

Name: NF17686_low_5
Description: NF17686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17686_low_5
NF17686_low_5
[»] chr5 (27 HSPs)
chr5 (1-269)||(40843149-40843417)
chr5 (1-269)||(31475767-31476035)
chr5 (10-269)||(31407257-31407507)
chr5 (12-264)||(31416383-31416635)
chr5 (11-268)||(31493968-31494216)
chr5 (2-269)||(31284714-31284981)
chr5 (1-259)||(31643706-31643964)
chr5 (2-269)||(31395756-31396023)
chr5 (2-269)||(31279312-31279579)
chr5 (11-259)||(31317365-31317613)
chr5 (155-266)||(31329924-31330035)
chr5 (155-266)||(31378706-31378817)
chr5 (3-269)||(31288483-31288747)
chr5 (155-246)||(31462999-31463090)
chr5 (154-272)||(31505875-31505993)
chr5 (17-269)||(31281430-31281681)
chr5 (154-246)||(31390808-31390900)
chr5 (158-269)||(31332196-31332307)
chr5 (2-259)||(31368579-31368836)
chr5 (151-240)||(31483703-31483792)
chr5 (158-269)||(31380981-31381092)
chr5 (154-242)||(31313270-31313358)
chr5 (163-268)||(31387788-31387893)
chr5 (161-259)||(31384368-31384466)
chr5 (200-253)||(31460389-31460442)
chr5 (190-259)||(31464978-31465047)
chr5 (2-70)||(31505723-31505791)
[»] chr4 (3 HSPs)
chr4 (26-177)||(6037823-6037974)
chr4 (133-236)||(8034097-8034203)
chr4 (51-236)||(8413568-8413758)
[»] chr3 (1 HSPs)
chr3 (2-269)||(25708434-25708701)


Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 40843149 - 40843417
Alignment:
Q  1 agaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40843149 agaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagct 40843248  T
Q  101 ttgaaccgaagacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40843249 ttgaaccgaagacttctagactgtttccatatattttcatacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaat 40843348  T
Q  201 tccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaacagcagctgaag 269  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40843349 tccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaacagcagctgaag 40843417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 31475767 - 31476035
Alignment:
Q  1 agaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31475767 agaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaatgaatagacagaggtgattgtcaatactaaaaaagctgtatgagct 31475866  T
Q  101 ttgaaccgaagacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31475867 ttgaaccgaagacttctagactgtttccatatattttcatacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaat 31475966  T
Q  201 tccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaacagcagctgaag 269  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  31475967 tccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaacagcagctgaag 31476035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 31407257 - 31407507
Alignment:
Q  10 gctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccga 109  Q
    |||||| ||||||||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31407257 gctatatgcatctggttttccattcaccactttatcaaagaaaaatgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccga 31407356  T
Q  110 agacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttc 209  Q
    ||||||||||| | ||||||||||||| || ||||||||         |||||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  31407357 agacttctagagtttttccatatatttgcatacaaaatc---------atgatgaaactgaaaagagtgtaaagaaatatcttcaacaaattccaatttc 31407447  T
Q  210 caaatagatagttgaaggaagagctgagagcataacaaaccagtccaacagcagctgaag 269  Q
    ||||||||| ||||||||||| ||||||||||||||| | || |||||||||||||||||    
T  31407448 caaatagatggttgaaggaagtgctgagagcataacagagcaatccaacagcagctgaag 31407507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 31416383 - 31416635
Alignment:
Q  12 tataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaag 111  Q
    |||| ||||||||||||||||| |  | ||||||  || |||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  31416383 tatatgcatctggttttccattcataattttatcagagaaaaatgaatagacagcagtgattgtcaatactagaaaagctgtatgagctttgaaccgaag 31416482  T
Q  112 acttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttcca 211  Q
    ||||||||| | || |||| ||||| || ||||||||| || ||| |||||||||||| ||| ||| |||||||||| ||||||||||||||| ||||||    
T  31416483 acttctagagttttgccatgtatttgcatacaaaatcaggaggcagatgatgaaactggaaagagtataaagaattaccttcaacaaattccaatttcca 31416582  T
Q  212 aatagatagttgaaggaagagctgagagcataacaaaccagtccaacagcagc 264  Q
    ||||||| |||||| |||||||| ||||||||||||| |||||||||||||||    
T  31416583 aatagatggttgaaagaagagcttagagcataacaaatcagtccaacagcagc 31416635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 31493968 - 31494216
Alignment:
Q  11 ctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaa 110  Q
    ||||| ||||||||||||||||| ||||||||| | ||| |||| |||||||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  31493968 ctatatgcatctggttttccattcaccactttaccaaagaaaaatgaatagacagaggtgattgttaataccagaaaagctgtatgagctttgaaccgaa 31494067  T
Q  111 gacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttcc 210  Q
    | ||||| || | || |||||||| | || |||||||||||| ||| |||||||||||||         ||||||||| ||||||||||||||| |||||    
T  31494068 gccttcttgagttttgccatatatgtgcatacaaaatcatgaggcagatgatgaaactga---------aaagaattaccttcaacaaattccaatttcc 31494158  T
Q  211 aaatagatagttgaaggaagagctgagagcataacaaaccagtccaacagcagctgaa 268  Q
    |||||||| |||||| |||||||| ||||||||||||| || ||||| | ||||||||    
T  31494159 aaatagatggttgaacgaagagcttagagcataacaaagcaatccaataacagctgaa 31494216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 31284981 - 31284714
Alignment:
Q  2 gaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctt 101  Q
    |||||||||||||| ||||||||||||||||| || |||||||| ||| |||| ||||| |  ||||||||||||||||| ||||| || | ||||||||    
T  31284981 gaaatgaggctatatgcatctggttttccattaactactttatcaaagaaaaatgaatataatgaggtgattgtcaataccaaaaacgcagcatgagctt 31284882  T
Q  102 tgaaccgaagacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaatt 201  Q
    |||||||||||||||| || | || ||| ||  || ||||||||| ||  | ||  |||||||| |||||||   |||| || |||||||||| || |||    
T  31284881 tgaaccgaagacttctcgagttttgccacatccttgcaaacaaaaccaccaagctgatgatgaagctgaaaatgctgtagaggattatcttcagcagatt 31284782  T
Q  202 ccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaacagcagctgaag 269  Q
    ||||| |||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||    
T  31284781 ccagtctccaaagagatagttgaaggaagagcttagagcataacaaagcagtccaatagcagatgaag 31284714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 31643706 - 31643964
Alignment:
Q  1 agaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagct 100  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||| ||||| |  || |||||||| ||||| ||| | ||||| || |||    
T  31643706 agaaatgaggctatatgcatctggttttccattcaccactttatcaaagaaaaatgaatataacgaagtgattgttaataccaaatatgctgtgtgtgct 31643805  T
Q  101 ttgaaccgaagacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaat 200  Q
    ||||| |||| |||||| ||  ||| ||| || ||| |||| |||||||||| ||  |||||||||||||||||  ||||||| |  |||||||||| ||    
T  31643806 ttgaatcgaatacttcttgagggttgccacatttttgcaaataaaatcatgaggctgatgatgaaactgaaaacgctgtaaaggaaaatcttcaacagat 31643905  T
Q  201 tccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaaca 259  Q
    |||| | ||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  31643906 tccaatctccaaatagatagttgaaggaagagctaagagcataacaaagtagtccaaca 31643964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 31396023 - 31395756
Alignment:
Q  2 gaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctt 101  Q
    ||||| || ||||| ||||||||||||||||| |  | ||||||  || |||| ||||| | |||||| ||||||||||| | ||| |||| ||||||||    
T  31396023 gaaattagactatatgcatctggttttccattcataattttatctgagaaaaaggaataaatagaggtaattgtcaataccagaaacgctgaatgagctt 31395924  T
Q  102 tgaaccgaagacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaatt 201  Q
    |||| ||| ||||  | || |||| |||| |  || || ||||||| |||  ||| ||||||||||||||||| |||||||||| ||||||| ||||  |    
T  31395923 tgaatcgatgactagtcgagtgttgccatgttcttgcatacaaaattatggagcagatgatgaaactgaaaactgtgtaaagaactatcttccacaatct 31395824  T
Q  202 ccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaacagcagctgaag 269  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  31395823 ccagtttccaaatagatgattgaaggaagagctgagagcataacaaacaagtccaacaacagctgaag 31395756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 269
Target Start/End: Original strand, 31279312 - 31279579
Alignment:
Q  2 gaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctt 101  Q
    ||||||||||||||  |||| ||||| ||||| | || |||||||||| |||| ||||| |  ||||| ||||||||||| ||| | ||||| || ||||    
T  31279312 gaaatgaggctatatccatcaggtttcccattcatcaatttatcgaagaaaaatgaatatagcgaggtcattgtcaataccaaatatgctgtgtgtgctt 31279411  T
Q  102 tgaaccgaagacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaatt 201  Q
    |||| ||||||||||| || |||  |||||||||| |||| ||||  |  | || ||||||||| ||||||||   |||||| |  |||||||| |||||    
T  31279412 tgaatcgaagacttcttgagtgtcgccatatatttacaaataaaacgaccaagctaatgatgaagctgaaaacgccgtaaaggaaaatcttcaagaaatt 31279511  T
Q  202 ccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaacagcagctgaag 269  Q
    ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  31279512 ccattctccaaagagatagttgaaggaagagctgagagcataacaaaccagtccaacaacaactgaag 31279579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 31317613 - 31317365
Alignment:
Q  11 ctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaa 110  Q
    ||||| ||||||||||| ||||| |  |||||||| ||| |||| |||||||  || |||| ||||||||| | ||| || | |||||||||||| ||||    
T  31317613 ctatatgcatctggtttcccattcatgactttatcaaagaaaaaggaatagattgaagtgagtgtcaataccagaaatgccgaatgagctttgaatcgaa 31317514  T
Q  111 gacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttcc 210  Q
    |||| ||||| |||| | || | ||| |||| |||||||  | ||| ||||||||||||||| |  ||||||||| ||| |||||||||||||| | |||    
T  31317513 gactgctagaatgttgcaatttctttgcaaataaaatcaccaagcagatgatgaaactgaaagcgctgtaaagaaatattttcaacaaattccattctcc 31317414  T
Q  211 aaatagatagttgaaggaagagctgagagcataacaaaccagtccaaca 259  Q
    ||| |||||||| ||||||||||| |  ||||| ||||| |||||||||    
T  31317413 aaagagatagttaaaggaagagcttaatgcatagcaaacaagtccaaca 31317365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 31330035 - 31329924
Alignment:
Q  155 caaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtc 254  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||| ||||||||||  |||| |||||    
T  31330035 caaatgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtc 31329936  T
Q  255 caacagcagctg 266  Q
    ||||| ||||||    
T  31329935 caacaacagctg 31329924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 31378817 - 31378706
Alignment:
Q  155 caaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtc 254  Q
    ||||||||||| ||||||||||| || ||||||||||| ||||||||||| | |||||| ||||||||||||||||| ||||||||||  |||| |||||    
T  31378817 caaatgatgaagctgaaaacagtatagagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtc 31378718  T
Q  255 caacagcagctg 266  Q
    ||||| ||||||    
T  31378717 caacaacagctg 31378706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 269
Target Start/End: Complemental strand, 31288747 - 31288483
Alignment:
Q  3 aaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagcttt 102  Q
    ||||||| ||||| |||| |||||||  ||| || |||||||||||| |||| ||||| |  ||||||||||| ||||| || |||||||| ||||||||    
T  31288747 aaatgagactatatgcatatggtttt--attcactactttatcgaagaaaaatgaatacagtgaggtgattgtaaataccaagaaagctgtctgagcttt 31288650  T
Q  103 gaaccgaagacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattc 202  Q
    |||||||| | |||| || |||||||||||  || |||| |||| |||   ||  | |||||  |||| |||  ||||||| |  |||||||||| ||||    
T  31288649 gaaccgaatagttcttgagtgtttccatatcattgcaaataaaaccatagggctgacgatgatgctgacaacgctgtaaaggaaaatcttcaacagattc 31288550  T
Q  203 cagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaacagcagctgaag 269  Q
    |||| |||| | ||||| |||||||||||||  ||| ||||| | | |||||||||| |||||||||    
T  31288549 cagtctccagagagataattgaaggaagagcatagaccataatagagcagtccaacaacagctgaag 31288483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 31462999 - 31463090
Alignment:
Q  155 caaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagcataaca 246  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||| | |||||||||    
T  31462999 caaataatgaaactgaaaacagtgtagagaataatcttcaacaagttccaatttccaaatagatggttgaaggaagagcttacagcataaca 31463090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 154 - 272
Target Start/End: Original strand, 31505875 - 31505993
Alignment:
Q  154 gcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagt 253  Q
    ||||||||||| || |||||||  |||||| | |||||||||| ||||||| ||||||||||||| | | |||||||| |||||||||||||||| || |    
T  31505875 gcaaatgatgagacagaaaacaccgtaaaggaatatcttcaaccaattccaatttccaaatagatggataaaggaagaactgagagcataacaaagcaat 31505974  T
Q  254 ccaacagcagctgaagtga 272  Q
    |||||| ||||||||||||    
T  31505975 ccaacaacagctgaagtga 31505993  T

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Target: chr5; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 31281681 - 31281430
Alignment:
Q  17 gcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaagacttc 116  Q
    ||||||||||||||||| | ||||||||| ||| |||| ||||| |  || |||||||| ||||| || |  || |  || |||||||| ||||||||||    
T  31281681 gcatctggttttccattcatcactttatcaaagaaaaaggaatacagcgaagtgattgttaataccaatat-gccgagtgtgctttgaagcgaagacttc 31281583  T
Q  117 tagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatag 216  Q
    | || |||  |||||||||| |||| ||||  |  | || ||||||||| ||||||||   |||||| |  ||||||||||||||||| | |||||| ||    
T  31281582 ttgagtgtcgccatatatttgcaaataaaacgaccaagctaatgatgaagctgaaaacgccgtaaaggaaaatcttcaacaaattccaatctccaaagag 31281483  T
Q  217 atagttgaaggaagagctgagagcataacaaaccagtccaacagcagctgaag 269  Q
    ||| |||||||||||||| | |||||||||||  ||||||| | |||||||||    
T  31281482 ataattgaaggaagagcttaaagcataacaaagaagtccaagaacagctgaag 31281430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 31390808 - 31390900
Alignment:
Q  154 gcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagcataaca 246  Q
    |||||| |||||||||||||||||||| ||||  ||||| ||||| ||||||||||||||||||| |||||||||||| || |||||||||||    
T  31390808 gcaaataatgaaactgaaaacagtgtacagaaaaatctttaacaagttccagtttccaaatagatggttgaaggaagaacttagagcataaca 31390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 31332307 - 31332196
Alignment:
Q  158 atgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaa 257  Q
    ||||||||||||||| || |||| |||| ||| |||||||||||||| | |||||| || ||||||||||||||||| | ||||||||||| ||||||||    
T  31332307 atgatgaaactgaaagcactgtagagaaatattttcaacaaattccattctccaaagaggtagttgaaggaagagcttaaagcataacaaagcagtccaa 31332208  T
Q  258 cagcagctgaag 269  Q
    || ||| |||||    
T  31332207 caacagatgaag 31332196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 259
Target Start/End: Complemental strand, 31368836 - 31368579
Alignment:
Q  2 gaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctt 101  Q
    ||||| || ||||| ||||||||||| ||||| |  |||||||   || |||| |||||||   | |||| ||||||||| | ||| || | ||||||||    
T  31368836 gaaattagactatatgcatctggtttcccattcatgactttattagagaaaaaggaatagattaaagtgagtgtcaataccagaaatgccgaatgagctt 31368737  T
Q  102 tgaaccgaagacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaatt 201  Q
    |||| || ||||||||||| |||| | || | | | |||| |||||||  | ||| ||||||||||||| | |  ||||||||| ||| |||||||||||    
T  31368736 tgaatcggagacttctagaatgttgcaatttctgtgcaaataaaatcaccaagcagatgatgaaactgacagcgctgtaaagaaatattttcaacaaatt 31368637  T
Q  202 ccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaaca 259  Q
     || | |||||| |||||||| ||||||||||| | |||||| ||||| |||||||||    
T  31368636 tcattctccaaagagatagttaaaggaagagcttaaagcatagcaaacaagtccaaca 31368579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 31483792 - 31483703
Alignment:
Q  151 gatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagc 240  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||  |||||||||||||| |||||    
T  31483792 gatgcagataatgaaactgaaaacagtgtaaagaattatcttcaacaaactccactttccacatatatgattgaaggaagagcttagagc 31483703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 31381092 - 31380981
Alignment:
Q  158 atgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaa 257  Q
    ||||||||||||||| || |||| |||| ||| |||||||||||||| | |||||| || || |||||||||||||| | ||||||||||| ||||||||    
T  31381092 atgatgaaactgaaagcactgtagagaaatattttcaacaaattccattctccaaagaggtaattgaaggaagagctcaaagcataacaaagcagtccaa 31380993  T
Q  258 cagcagctgaag 269  Q
    || ||| |||||    
T  31380992 caacagatgaag 31380981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 31313358 - 31313270
Alignment:
Q  154 gcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagcat 242  Q
    ||||| ||||||||||||||||||||||||| |||||  |||||   ||||   |||||||||||||||||||||||| || |||||||    
T  31313358 gcaaaggatgaaactgaaaacagtgtaaagagttatcaccaacatggtccatcctccaaatagatagttgaaggaagaacttagagcat 31313270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 31387788 - 31387893
Alignment:
Q  163 gaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaacagca 262  Q
    |||||||||||   | ||||||| || ||| || || |||||||| ||||||||||   ||||||||||||| ||||||||||||| |||||||||| ||    
T  31387788 gaaactgaaaatgctataaagaaataccttaaaaaagttccagttcccaaatagatgagtgaaggaagagctaagagcataacaaagcagtccaacaaca 31387887  T
Q  263 gctgaa 268  Q
    | ||||    
T  31387888 gatgaa 31387893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 31384368 - 31384466
Alignment:
Q  161 atgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaaca 259  Q
    |||||||||||||  || ||||||| || ||| || || ||||| || ||||||||||  |||||||||||||| ||||||||| ||| ||| ||||||    
T  31384368 atgaaactgaaaatggtataaagaaataacttgaaaaagttccatttcccaaatagatgattgaaggaagagctaagagcataataaaacagaccaaca 31384466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 31460389 - 31460442
Alignment:
Q  200 ttccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagt 253  Q
    |||||||| ||||||||||  |||||||||||||| ||||||||||||| ||||    
T  31460389 ttccagttcccaaatagatgattgaaggaagagctaagagcataacaaagcagt 31460442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 31464978 - 31465047
Alignment:
Q  190 cttcaacaaattccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaaca 259  Q
    |||||| |||||||| |||||||||||||  |||||||||| ||| ||||| ||||| | ||||||||||    
T  31464978 cttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagcagtccaaca 31465047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 31505723 - 31505791
Alignment:
Q  2 gaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtg 70  Q
    |||||||||||||| ||||||||||| ||||| | || ||||||| || |||| ||||| || ||||||    
T  31505723 gaaatgaggctatatgcatctggtttcccattaatcattttatcggagaaaaaggaatacaccgaggtg 31505791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 6037823 - 6037974
Alignment:
Q  26 tttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaagacttctagactgtt 125  Q
    |||||||| | |||||||| |||| |||| || ||||| || |||||||||||||  || |||||||||||| ||||||||  |||||||||||| || |    
T  6037823 tttccattcatcactttattgaagaaaaatgagtagactgatgtgattgtcaatatcaagaaagctgtatgaactttgaacaaaagacttctagagtggt 6037922  T
Q  126 tccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagt 177  Q
    ||||||||||| || | ||||||||||  || ||||||||||||| ||||||    
T  6037923 tccatatatttgcatataaaatcatgagccagatgatgaaactgataacagt 6037974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 8034203 - 8034097
Alignment:
Q  133 attttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagt---gtaaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaa 229  Q
    |||| ||||||||||||| |  ||||| ||||||| |||||||||   ||||| || ||||||||||||||| || ||| ||||||||| ||||||||||    
T  8034203 atttgcaaacaaaatcattaaacaaattatgaaacagaaaacagtagtgtaaataagtatcttcaacaaatttcaatttacaaatagatggttgaaggaa 8034104  T
Q  230 gagctga 236  Q
    || ||||    
T  8034103 gatctga 8034097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 8413568 - 8413758
Alignment:
Q  51 aaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaagacttctagactgtttccatatatttt---caaacaaaat 147  Q
    |||| ||||||||||| || ||||||||||| ||||| ||   |||||||||||| ||||||||  | || |||| |||| |  ||    ||||||||||    
T  8413568 aaaaggaatagacagaagtaattgtcaataccaaaaacgccaaatgagctttgaatcgaagactggtcgagtgttgccatgttgttgttgcaaacaaaat 8413667  T
Q  148 catgatgcaaatgatgaaactgaaaacagt-gt-aaagaattatcttcaacaaattccagtttccaaatagatagttgaaggaagagctga 236  Q
     || |  ||||| |||||||  |||||||| || ||| || |||||||| ||||||||| ||||| ||||||| |||||||||||| ||||    
T  8413668 aattagacaaattatgaaacacaaaacagtagtgaaataagtatcttcatcaaattccaatttcccaatagatggttgaaggaagatctga 8413758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 25708701 - 25708434
Alignment:
Q  2 gaaatgaggctataagcatctggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctt 101  Q
    ||||||||||||||||||||||||||  |||| |||||||||||  |   ||| ||||| || |||||||  ||||| || ||||| || ||||||||||    
T  25708701 gaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaagaataaactgaggtgagggtcaaaacaaaaaaggcggtatgagctt 25708602  T
Q  102 tgaaccgaagacttctagactgtttccatatattttcaaacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaacaaatt 201  Q
    |||||   |||| ||| ||   || |||||  |||  | |||||||||| |  || || |||||||| | |||| ||||||||||||||||  |||| ||    
T  25708601 tgaacttcagacctctggatgattgccatacctttggatacaaaatcataagacagattatgaaacttataacactgtaaagaattatctttgacaagtt 25708502  T
Q  202 ccagtttccaaatagatagttgaaggaagagctgagagcataacaaaccagtccaacagcagctgaag 269  Q
    ||| |  ||||| ||||| || || |||||||||||||||||||| || |||||||||  ||||||||    
T  25708501 ccactcaccaaacagataattaaatgaagagctgagagcataacagactagtccaacaatagctgaag 25708434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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