View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17687_high_11 (Length: 348)
Name: NF17687_high_11
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 40062795 - 40062461
Alignment:
| Q |
1 |
atcaaaagttaagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccggtgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40062795 |
atcaaaagttaagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgttactggaccggtgat |
40062696 |
T |
|
| Q |
101 |
ccccgctccccatgtgtcnnnnnnngctccataattctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatcattggaggagcaag |
200 |
Q |
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||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40062695 |
ccccgctccccatctgtcaaaaaaagctccatagttctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatctttggaggagcaag |
40062596 |
T |
|
| Q |
201 |
ccattctatgcatgattggaaactacaaacacgaaaatctgaacctgaagtccaactgttagactcagcagatcaatttggttatttccataaaatactt |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40062595 |
ccattctatgcataattggaaactacaaacacgaaaatctgaacctgaagtccaactgttagactcagcagatcaatttggttatttccataaattactt |
40062496 |
T |
|
| Q |
301 |
tgattgggatgtccacattaagcttaggtttgtct |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40062495 |
tgattgggatgtccacattaagcttaggtttgtct |
40062461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 40093447 - 40093122
Alignment:
| Q |
1 |
atcaaaagttaagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccggtgat |
100 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40093447 |
atcaaaagtgaagactgacctgatatgtccacttccgagaggagagatcaagagtcttgttgccattcttcaaacctttcaatatcactggaccggtgat |
40093348 |
T |
|
| Q |
101 |
ccccgctccccatgtgtcnnnnnnngctccataattctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatcattggaggagcaag |
200 |
Q |
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|||||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
40093347 |
ccccgctccccatgtgtcaaaaaaagctccatagttctgatgtgtatatggttcatgttag-----atatagtaatgagagaaatcattgggggagcaag |
40093253 |
T |
|
| Q |
201 |
ccattctatgcatgattggaaactacaaacacgaaaatctgaacctgaagtccaactgttagactcagcagatcaatttggttatttccataaaatactt |
300 |
Q |
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| T |
40093252 |
caattctatgcataattggaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaactcagcagatcaattttattctttccagaaagaactg |
40093153 |
T |
|
| Q |
301 |
tgattgggatgtccacattaagcttaggttt |
331 |
Q |
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|||| ||||||||| |||||||||||||||| |
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| T |
40093152 |
tgatcgggatgtcctcattaagcttaggttt |
40093122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 40081141 - 40080933
Alignment:
| Q |
4 |
aaaagttaagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccggtgatccc |
103 |
Q |
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|||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
40081141 |
aaaatttaagattgacctgatatgtccacttccgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatatcacgggaccggtgatccc |
40081042 |
T |
|
| Q |
104 |
cgctccccatgtgtcnnnnnnngctccataattctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatcattggaggagcaagcca |
203 |
Q |
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|||||| |||||| |||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
40081041 |
tgctcccactgtgtcaaaaaaggctccatagttctgatgtgtatatggttcatattagcttagatatagtaatgagagaaatcactgaaggagcaagcca |
40080942 |
T |
|
| Q |
204 |
ttctatgca |
212 |
Q |
| |
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|||||||| |
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| T |
40080941 |
gtctatgca |
40080933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 40080901 - 40080793
Alignment:
| Q |
219 |
gaaactacaaacacgaaaatctgaacctgaagtccaactgttagactcagcagatcaatttggttatttccataaaatactttgattgggatgtccacat |
318 |
Q |
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||||||| ||||| ||||| ||||||||||||||||||||||| |||||| |||||||||| ||| ||||| ||| || | ||||||||||||||||| |
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| T |
40080901 |
gaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaactcagtagatcaattttgttctttccggaaactagtgcgattgggatgtccacat |
40080802 |
T |
|
| Q |
319 |
taagcttag |
327 |
Q |
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||||||||| |
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| T |
40080801 |
taagcttag |
40080793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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